genome.fa.s8930.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008930.1 Hibiscus syriacus cultivar Beakdansim tig00112236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  792381

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770004--770059	21	2.7	21	94	0	103	26	25	23	25	2.00
770576--770626	18	2.7	19	73	11	52	56	0	5	37	1.23
771187--771296	32	3.5	31	81	6	112	40	29	10	20	1.86
772125--772198	23	3.3	23	76	16	73	56	8	13	21	1.63
772131--772196	23	3.0	21	82	8	78	59	6	15	19	1.57
774326--774367	21	2.0	21	100	0	84	33	4	4	57	1.41
774611--775148	70	7.8	69	76	9	379	28	24	17	29	1.97
774638--775148	210	2.5	201	79	6	506	28	24	17	29	1.98
775333--775446	57	2.0	57	87	0	165	35	21	14	27	1.93
775257--775523	133	2.0	133	85	0	354	38	22	12	26	1.90
775393--775660	76	3.5	76	86	2	358	40	21	10	27	1.85
775390--775670	152	1.8	152	86	0	409	40	21	10	27	1.86
777236--777275	2	20.0	2	100	0	80	50	0	0	50	1.00
777901--778070	32	5.4	32	84	6	179	28	15	19	36	1.93
777901--778070	64	2.7	63	85	1	207	28	15	19	36	1.93
778676--778727	21	2.4	21	87	3	68	26	21	26	25	1.99
781349--781403	20	2.8	20	91	5	76	25	30	12	30	1.93
789148--789208	7	7.7	7	84	12	50	78	0	11	9	0.96
789146--789236	8	10.8	9	81	14	81	81	0	9	8	0.88
789145--789186	19	2.3	18	92	8	68	80	0	9	9	0.89
789145--789253	16	6.5	17	72	18	77	81	0	11	7	0.87
789163--789265	8	12.5	8	82	12	68	82	0	9	7	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789148--789266	41	3.0	41	83	11	126	80	0	10	8	0.90
790543--790818	54	5.1	54	88	4	409	28	14	29	27	1.95
790543--790821	109	2.6	107	87	7	431	28	14	29	27	1.95
790543--791331	153	5.0	158	82	10	447	29	15	27	28	1.96
790814--791616	52	15.6	52	90	3	1261	29	15	25	29	1.96
790871--790952	26	3.1	27	62	13	62	28	15	23	32	1.95
791046--791126	24	3.2	24	67	13	63	34	13	29	22	1.92
791126--791209	28	3.1	28	60	30	65	29	16	23	29	1.96
790814--791616	360	2.2	360	94	3	1379	29	15	25	29	1.96
791396--791476	26	3.1	26	66	13	67	29	16	24	29	1.96

Tables:   1   2   3   4   5

The End!