genome.fa.s8930.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008930.1 Hibiscus syriacus cultivar Beakdansim tig00112236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  792381

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531518--531635	57	2.1	58	84	10	154	35	7	3	53	1.46
531649--531708	26	2.3	26	88	5	86	36	8	1	53	1.41
531008--531776	29	25.0	31	64	28	105	35	8	2	53	1.46
531712--531823	48	2.3	49	85	8	142	39	7	0	52	1.35
531658--531974	54	5.5	57	69	19	155	38	7	1	51	1.42
531885--531972	10	9.4	9	70	22	58	42	5	1	51	1.33
531885--531972	16	5.9	16	69	24	50	42	5	1	51	1.33
531885--531972	20	4.7	19	75	16	78	42	5	1	51	1.33
532033--532090	19	3.0	19	82	7	64	41	13	0	44	1.44
537625--538017	195	2.0	198	98	1	765	22	15	9	51	1.73
538558--538600	18	2.4	18	88	7	61	20	9	4	65	1.40
544066--544102	17	2.1	18	85	14	51	45	2	16	35	1.61
544095--544127	2	16.5	2	100	0	66	51	0	0	48	1.00
544518--544580	23	2.7	23	82	0	81	19	25	25	30	1.98
546159--546232	36	2.1	36	100	0	148	28	21	24	25	1.99
547050--547138	44	2.0	44	100	0	178	20	25	24	29	1.99
550283--550325	18	2.4	18	92	7	70	20	6	4	67	1.33
554395--554451	29	2.0	28	82	3	69	33	21	22	22	1.97
554425--554470	22	2.1	22	95	0	83	32	21	23	21	1.98
555607--555660	21	2.6	21	93	0	90	29	27	22	20	1.98
556193--556225	6	5.5	6	96	0	57	0	15	54	30	1.41
556318--556483	21	7.8	21	74	16	155	35	22	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556311--556492	42	4.3	42	92	0	319	34	23	20	21	1.97
568335--568366	16	2.0	16	93	0	55	37	3	18	40	1.67
569880--569927	20	2.4	20	92	0	87	31	0	29	39	1.57
573614--573684	31	2.3	31	78	9	74	23	14	11	50	1.74
574874--574948	31	2.4	31	100	0	150	36	6	21	36	1.80
574996--575039	21	2.1	21	83	4	54	31	22	15	29	1.95
575952--575976	2	12.5	2	100	0	50	48	0	0	52	1.00
585598--585643	21	2.1	22	92	4	76	45	0	13	41	1.43
586014--586070	30	2.0	28	93	6	96	47	21	3	28	1.67
591638--591769	54	2.4	54	83	1	165	26	25	18	29	1.98
591776--591934	55	2.9	55	94	0	273	30	25	14	29	1.95
591768--591980	110	1.9	108	83	8	270	27	24	15	31	1.96
591659--592553	51	17.0	51	80	8	639	24	24	18	32	1.97
591936--592553	207	3.0	205	83	6	773	22	24	18	33	1.96
591965--592553	156	3.8	154	83	7	620	23	24	18	33	1.97
592923--593112	36	5.2	36	86	1	229	20	19	22	37	1.94
595812--595841	16	1.9	16	93	6	53	13	20	0	66	1.24
595796--595902	24	4.4	22	72	20	72	8	17	0	73	1.07
595850--595909	13	4.4	13	73	22	52	8	15	0	76	1.00
598480--598637	21	7.6	21	88	7	207	15	22	22	39	1.91
602701--602735	2	17.5	2	100	0	70	51	0	0	48	1.00
602747--602796	17	2.9	16	82	8	55	42	2	6	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602988--603068	36	2.2	36	95	0	144	22	20	18	38	1.94
603442--603473	2	16.0	2	100	0	64	50	0	0	50	1.00
604176--604221	23	2.0	23	86	0	65	50	0	2	47	1.13
604286--604314	14	2.1	14	100	0	58	55	24	6	13	1.63
604662--604713	8	6.2	8	75	16	52	61	0	1	36	1.07
604662--604713	25	2.1	25	89	7	79	61	0	1	36	1.07
604783--604907	36	3.5	33	70	15	83	52	2	0	44	1.19
606008--606060	25	2.1	25	100	0	106	35	18	15	30	1.92
609466--609522	28	2.0	28	86	3	78	42	10	8	38	1.71
612733--612772	13	3.1	13	81	0	53	30	7	22	40	1.81
612974--613008	16	2.1	18	89	10	56	45	2	0	51	1.16
618620--618684	2	32.5	2	100	0	130	50	0	0	49	1.00
618782--618830	25	2.0	25	87	0	71	24	26	8	40	1.83
621136--621220	30	2.9	29	78	5	89	32	15	9	42	1.79
621144--621220	29	2.6	28	80	10	82	32	15	10	41	1.81
625278--625357	5	16.2	5	83	5	83	36	0	0	63	0.94
630346--630391	23	2.0	23	95	0	83	41	19	26	13	1.88
642430--642551	63	1.9	64	83	5	158	35	20	16	27	1.94
645638--645723	44	2.0	44	90	0	136	26	17	25	30	1.97
645616--645709	21	4.4	21	75	15	93	25	13	26	34	1.94
646616--646665	20	2.5	20	90	3	75	32	20	10	38	1.85
648581--648644	2	32.0	2	100	0	128	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650423--650471	23	2.1	23	84	3	62	36	8	4	51	1.51
650981--651016	16	2.2	16	90	0	54	25	5	0	69	1.10
651027--651159	61	2.2	61	85	4	171	33	12	15	39	1.85
657166--657227	33	1.9	33	93	3	108	45	33	4	16	1.68
658848--658921	26	2.9	26	87	2	114	55	4	6	33	1.45
659562--659636	35	2.2	35	97	2	143	37	10	13	38	1.79
659901--659968	3	22.3	3	78	14	52	64	1	32	1	1.11
659900--659966	14	4.9	14	75	14	59	62	1	34	1	1.13
659901--659942	17	2.5	17	88	7	59	61	0	38	0	0.96
661133--661179	2	23.5	2	95	0	85	48	2	0	48	1.13
665546--665574	6	5.0	6	91	8	51	17	31	34	17	1.93
667003--667115	58	1.9	58	92	0	190	24	23	15	36	1.93
675853--675898	19	2.6	17	81	15	58	67	2	2	28	1.14
682374--682423	23	2.2	23	88	0	73	38	6	22	34	1.78
682338--682586	87	2.9	87	93	1	437	42	10	13	32	1.78
682461--682509	23	2.1	23	88	0	71	40	8	16	34	1.78
682604--683110	200	2.5	198	83	4	619	31	14	14	39	1.87
686798--687564	199	3.8	199	86	4	1039	31	15	13	38	1.87
687799--687835	18	2.1	18	89	0	56	54	10	5	29	1.57
690649--691808	200	5.8	199	88	2	1477	32	16	13	38	1.87
690643--691808	402	2.9	398	85	4	1547	32	16	13	37	1.87
691825--691878	15	3.6	15	97	0	99	22	12	25	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692192--692237	19	2.4	19	96	0	83	54	10	2	32	1.47
693801--693838	18	2.1	18	90	0	58	7	34	0	57	1.28
694088--694131	21	2.1	21	95	0	79	13	31	13	40	1.84
694214--694246	15	2.2	15	100	0	66	12	63	6	18	1.48
696549--697220	182	3.7	182	91	1	1046	27	16	14	40	1.88
696549--697220	362	1.9	363	89	1	1062	27	16	14	40	1.88
698885--698938	19	2.8	19	97	0	99	29	16	7	46	1.74
699921--699946	2	13.0	2	100	0	52	50	0	0	50	1.00
714901--714945	21	2.1	21	95	0	81	26	13	22	37	1.91
717180--717224	16	2.8	16	82	0	54	51	15	11	22	1.75
719363--719410	21	2.3	21	100	0	96	25	20	22	31	1.98
720065--720111	25	1.9	25	86	4	69	34	4	29	31	1.77
722476--722747	98	2.7	97	78	7	292	36	10	17	36	1.84
724616--724644	15	1.9	15	100	0	58	27	27	24	20	1.99
724728--724833	29	3.7	29	94	1	187	18	19	15	46	1.84
726160--726189	15	2.0	15	93	0	51	26	26	3	43	1.70
726259--726293	16	2.1	17	89	5	54	51	22	0	25	1.48
726458--726498	2	20.5	2	94	0	73	51	0	0	48	1.00
731151--731185	18	1.9	19	88	11	56	65	0	5	28	1.15
732100--732125	12	2.2	12	100	0	52	23	38	19	19	1.93
733036--733130	47	2.0	47	100	0	190	44	10	10	34	1.73
743886--743914	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746990--747023	16	2.1	16	88	0	50	38	0	2	58	1.13
752210--752256	14	3.3	14	90	3	67	42	23	12	21	1.87
752363--752420	28	2.1	28	87	3	82	44	22	6	25	1.77
759972--760009	18	2.1	18	90	9	60	21	34	15	28	1.94
764883--764944	6	10.3	6	98	0	97	37	0	45	17	1.49
767432--767478	23	2.1	23	88	4	69	51	0	4	44	1.21
768782--768811	15	1.9	16	93	6	53	56	13	6	23	1.60
769158--769197	21	1.9	21	100	0	80	20	27	22	30	1.98
769445--769490	22	2.1	22	87	0	65	63	8	8	19	1.49
769752--769803	16	3.1	17	78	13	63	36	0	3	59	1.16

Tables:   1   2   3   4   5