genome.fa.s9036.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1934717

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417186--417251	34	1.9	35	84	6	91	50	4	0	45	1.22
419144--419547	54	7.5	54	86	1	515	26	16	21	35	1.94
429807--429869	31	2.0	31	96	0	117	30	19	15	34	1.93
448907--448936	15	2.0	15	100	0	60	6	13	60	20	1.55
449259--449303	18	2.7	16	86	6	63	28	31	4	35	1.77
450217--450288	2	36.5	2	71	18	53	50	2	1	45	1.25
450217--450270	19	2.8	19	78	15	67	51	1	1	44	1.22
450261--450319	18	3.3	18	79	11	68	47	3	1	47	1.29
450222--450383	13	12.2	13	72	16	93	48	4	3	43	1.40
450511--450572	19	3.3	19	80	8	81	43	0	30	25	1.55
450954--451022	35	2.0	35	85	0	93	40	36	0	23	1.55
450953--451021	7	10.0	7	87	1	77	42	36	0	21	1.53
451066--451100	2	18.0	2	94	5	63	51	0	0	48	1.00
451186--451246	32	1.9	32	86	0	86	47	31	0	21	1.51
452556--452647	23	4.0	23	83	5	123	32	23	19	23	1.97
457526--457603	23	3.3	23	85	1	102	33	23	19	24	1.97
460834--460880	14	3.7	14	71	26	50	51	4	0	44	1.21
460832--460881	23	2.1	24	96	3	93	48	4	0	48	1.20
461149--461203	16	3.4	16	84	0	74	40	12	23	23	1.89
461427--461488	18	3.4	18	95	0	106	17	14	24	43	1.86
462051--462203	80	1.9	80	93	0	261	39	23	3	32	1.73
463330--464179	212	4.0	212	91	1	1292	29	15	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467075--467125	21	2.5	21	93	3	86	58	3	7	29	1.44
469834--469871	20	1.9	20	88	0	58	42	2	7	47	1.46
471106--471143	3	12.3	3	84	15	51	34	0	0	65	0.93
472682--472747	27	2.4	27	92	0	114	28	13	34	22	1.92
472748--472791	23	1.9	23	95	0	79	15	27	27	29	1.96
472801--472862	23	2.7	23	97	0	115	16	24	22	37	1.94
477492--477519	2	14.0	2	100	0	56	50	0	0	50	1.00
486983--488299	660	2.0	660	96	0	2442	36	20	13	29	1.90
489107--489160	27	2.0	27	100	0	108	48	0	25	25	1.52
491719--491796	21	3.7	21	89	0	102	26	19	25	28	1.99
491897--491949	20	2.7	20	88	2	72	37	15	5	41	1.70
494008--494054	21	2.2	21	88	0	76	19	25	17	38	1.92
493947--494060	20	5.6	21	72	5	63	26	27	15	30	1.96
494049--494228	40	4.5	40	79	10	192	40	23	16	20	1.91
494082--494228	20	7.4	20	77	10	149	40	23	16	19	1.91
494356--494406	22	2.3	22	100	0	102	27	45	7	19	1.78
494670--494700	13	2.5	13	94	5	55	0	6	12	80	0.89
494712--494751	14	2.9	14	84	0	53	42	32	15	10	1.79
494760--494825	20	3.3	20	93	0	114	12	19	16	51	1.75
496894--496992	21	4.7	21	77	7	103	25	35	18	21	1.95
496893--497012	42	2.9	42	78	10	120	24	35	19	20	1.95
498413--498466	28	1.9	28	84	0	72	31	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498413--498449	14	2.6	14	100	0	74	29	0	21	48	1.50
498617--498687	20	3.5	20	88	0	97	15	14	25	45	1.84
499025--499093	6	11.8	6	81	6	88	17	2	20	59	1.50
499019--499074	22	2.8	21	87	12	82	17	1	21	58	1.47
501513--501546	12	2.8	12	90	0	50	14	0	29	55	1.40
502096--502133	16	2.5	15	84	12	51	65	0	5	28	1.14
502292--502364	21	3.6	20	89	7	103	31	13	17	36	1.89
502353--502475	20	6.2	20	76	7	124	19	13	21	44	1.85
502372--502494	40	3.1	40	82	9	169	20	14	21	43	1.88
502343--502456	60	1.9	61	87	1	167	21	15	21	42	1.89
502477--502514	20	1.9	20	94	0	67	26	18	18	36	1.94
502335--502522	80	2.3	80	80	5	218	22	15	20	40	1.90
506919--506997	39	2.0	39	100	0	158	32	7	15	44	1.74
508218--508290	20	3.7	20	83	0	74	31	21	26	20	1.98
508310--508365	20	2.7	21	91	2	87	21	19	35	23	1.96
508588--508627	21	1.9	21	94	0	71	50	7	10	32	1.64
509693--509739	23	2.0	23	83	0	58	29	10	4	55	1.53
510910--510949	21	1.9	22	90	10	66	12	10	40	37	1.77
511052--511115	32	2.0	33	90	3	103	28	21	29	20	1.98
511135--511211	21	3.7	21	91	1	120	22	19	36	22	1.95
511548--511625	39	2.0	39	92	0	129	28	15	24	32	1.95
514221--514290	30	2.3	30	83	7	88	47	7	2	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514883--514941	3	18.7	3	80	16	66	37	1	0	61	1.07
515438--515470	2	16.5	2	100	0	66	51	0	0	48	1.00
516446--516507	24	2.6	23	79	7	70	38	0	3	58	1.15
521105--521303	64	3.1	63	78	13	201	32	24	16	26	1.96
521275--521323	19	2.6	19	84	9	57	24	28	20	26	1.99
527080--527154	23	3.4	21	78	12	80	26	24	22	26	2.00
532299--532345	3	15.7	3	82	8	60	34	2	2	61	1.20
541369--541429	24	2.5	24	81	0	68	24	8	18	49	1.74
543098--543137	20	2.0	21	90	5	64	62	5	5	27	1.37
547452--548392	473	2.0	473	95	0	1715	41	14	14	29	1.86
550423--550497	24	3.2	24	77	11	75	37	24	20	18	1.94
550463--550587	23	5.4	23	80	3	135	37	26	17	18	1.93
550463--550587	46	2.7	46	81	4	153	37	26	17	18	1.93
550746--550796	19	2.7	19	100	0	102	47	17	13	21	1.82
557083--557456	194	1.9	191	94	1	658	45	16	15	21	1.85
570466--570504	12	3.4	12	86	10	55	17	7	2	71	1.21
573797--573862	26	2.4	27	85	7	89	42	18	24	15	1.88
573812--573862	26	2.0	26	96	0	93	43	19	23	13	1.87
573854--573929	28	2.7	28	82	9	84	50	9	27	13	1.71
573838--573973	29	4.8	28	75	10	91	46	14	23	15	1.83
579800--579885	28	3.0	29	86	10	131	43	11	20	24	1.85
579802--579889	29	3.1	29	80	18	112	44	11	20	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581310--581440	65	2.0	65	89	2	201	34	5	16	44	1.70
581646--581753	53	2.0	53	92	3	182	40	12	1	44	1.54
581993--582020	2	14.0	2	100	0	56	50	0	0	50	1.00
582078--582147	35	2.0	35	88	5	106	34	5	17	42	1.73
582445--582477	2	17.0	2	93	6	59	48	0	0	51	1.00
582579--582735	30	5.5	30	81	6	166	56	2	5	35	1.37
582952--583584	244	2.6	242	90	1	960	37	10	12	39	1.78
583667--583716	19	2.5	20	83	6	66	40	20	20	20	1.92
583712--583762	27	2.0	25	85	14	68	58	1	1	37	1.20
591087--591111	13	1.9	13	100	0	50	64	8	4	24	1.38
601603--601659	16	3.6	16	87	0	69	45	21	19	14	1.85
601600--601686	16	5.5	15	83	4	66	45	25	17	11	1.81
601708--601745	18	2.1	18	85	9	51	44	7	2	44	1.47
602110--602250	36	3.9	36	85	5	187	18	21	20	39	1.92
602110--602255	72	2.0	72	92	2	240	17	21	19	41	1.91
605177--605242	22	3.0	22	86	2	96	19	18	27	34	1.95
609412--609480	23	3.0	23	80	4	68	31	26	21	20	1.98
609591--609626	18	2.0	18	100	0	72	33	33	22	11	1.89
609579--609770	59	3.2	58	66	23	146	37	25	14	23	1.92
609487--609848	121	3.0	121	95	0	647	36	24	14	24	1.93
609712--609747	18	2.0	18	94	0	63	36	33	19	11	1.87
616570--616610	21	2.0	21	90	0	64	21	7	9	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618860--618899	19	2.1	19	85	0	53	55	7	2	35	1.42
619384--619409	11	2.4	11	100	0	52	19	0	0	80	0.71
624693--624719	13	2.1	13	100	0	54	37	14	25	22	1.93
624949--624985	2	18.5	2	100	0	74	51	0	0	48	1.00
637603--637681	23	3.5	23	77	11	92	24	24	24	27	2.00
640472--640500	15	1.9	15	100	0	58	27	0	20	51	1.47
640956--641094	60	2.3	60	87	0	197	36	23	2	37	1.70
641010--641093	29	2.8	29	73	8	71	36	25	1	36	1.64
640956--641124	60	2.8	59	82	4	151	34	24	2	37	1.71
641602--641653	23	2.3	23	96	0	95	53	11	0	34	1.37

Tables:   1   2   3   4   5   6   7   8   9