genome.fa.s9036.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1934717

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642931--642986	28	2.0	28	100	0	112	35	0	17	46	1.49
645168--645250	25	3.1	25	74	15	85	38	2	6	53	1.39
649734--649773	20	2.0	20	95	0	71	45	12	5	37	1.64
649787--649826	20	2.0	21	90	5	64	45	15	5	35	1.68
649840--649878	20	2.0	20	94	0	69	41	17	5	35	1.72
649730--649879	53	2.9	52	96	3	275	48	13	6	32	1.67
650790--650826	14	2.6	14	100	0	74	40	5	10	43	1.63
650788--650831	14	2.9	16	83	13	65	40	4	11	43	1.61
650781--650838	14	4.1	14	86	0	62	43	3	8	44	1.51
662806--662870	28	2.3	28	91	0	112	35	12	23	29	1.91
663336--663378	22	2.0	22	86	9	61	41	23	4	30	1.74
664874--664997	50	2.5	50	81	0	149	16	35	27	20	1.94
665274--665606	111	3.0	111	96	0	603	36	8	10	45	1.68
667111--667146	18	2.0	18	94	0	63	36	27	13	22	1.92
669594--669720	50	2.5	50	88	0	191	18	29	36	15	1.92
671411--671440	2	15.0	2	100	0	60	50	0	0	50	1.00
674874--674908	4	8.8	4	87	12	54	25	0	0	74	0.82
674871--674909	16	2.4	17	86	4	62	25	0	0	74	0.82
677458--677505	2	24.0	2	100	0	96	50	0	0	50	1.00
677828--677857	10	2.9	10	95	5	51	13	0	0	86	0.57
678287--678541	84	3.1	82	78	3	262	30	25	19	24	1.98
679123--679157	5	6.8	5	87	6	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679117--679169	23	2.3	24	81	18	69	30	0	0	69	0.88
679817--679843	5	5.4	5	100	0	54	18	0	0	81	0.69
682635--682670	15	2.4	15	95	0	63	63	11	8	16	1.49
683198--683921	110	6.6	110	92	0	1124	34	21	17	25	1.96
684756--685371	84	7.4	83	81	3	677	29	26	19	24	1.99
684758--685371	164	3.7	165	82	4	682	29	26	20	24	1.99
684757--685371	248	2.5	248	91	0	996	29	26	20	24	1.99
685947--685983	18	1.9	19	89	10	58	29	0	0	70	0.88
685953--685995	3	15.3	3	81	13	56	30	0	0	69	0.88
686111--686189	36	2.2	36	97	0	149	32	45	6	15	1.71
699366--699417	20	2.5	20	81	6	59	25	15	28	30	1.96
699943--699996	21	2.6	21	85	5	74	20	16	29	33	1.95
699982--700042	23	2.7	23	84	5	88	21	22	26	29	1.99
707114--707802	39	17.7	39	87	2	956	37	15	15	31	1.89
707128--707802	118	5.8	118	86	3	889	37	15	16	31	1.89
707114--707802	157	4.4	157	88	2	969	37	15	15	31	1.89
707861--707976	36	3.1	36	65	16	83	40	7	17	34	1.78
707768--708185	77	5.5	76	86	3	533	38	11	15	33	1.84
709549--709652	7	15.3	7	94	6	171	0	25	0	74	0.83
709543--709658	28	4.1	28	74	21	109	0	25	0	75	0.81
715206--715236	13	2.4	13	100	0	62	45	25	12	16	1.83
716260--716293	15	2.3	15	94	0	59	29	2	5	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723153--723293	35	3.9	35	74	18	128	20	22	19	36	1.95
723075--723293	75	2.9	76	87	5	320	22	21	19	36	1.95
725937--726005	30	2.3	30	97	0	129	34	15	14	34	1.89
729405--729446	22	1.9	22	95	0	75	16	0	21	61	1.34
730259--730303	21	2.1	21	83	0	54	57	4	4	33	1.38
731030--731122	21	4.5	21	78	4	100	39	18	24	17	1.91
731030--731122	41	2.3	41	100	0	186	39	18	24	17	1.91
731049--731183	41	3.3	41	82	6	132	38	20	21	19	1.94
731111--731205	20	4.7	20	80	2	91	34	24	17	23	1.96
731393--731436	22	2.0	22	95	0	79	20	45	15	18	1.85
731713--731755	20	2.2	20	95	0	77	9	18	18	53	1.70
733072--733116	18	2.5	18	85	0	63	26	42	15	15	1.87
733606--733650	20	2.3	20	84	3	65	37	20	24	17	1.93
733634--733729	19	5.6	18	69	25	75	47	20	19	11	1.80
733634--733724	32	2.8	33	91	3	148	49	20	18	10	1.78
733650--733707	14	3.9	14	79	16	62	51	22	17	8	1.72
733736--733858	20	6.7	19	78	10	105	13	20	24	42	1.87
733725--733858	39	3.6	37	71	18	111	12	19	25	42	1.86
735694--735729	14	2.6	14	90	0	54	30	0	22	47	1.52
735836--735889	14	3.5	14	73	22	54	48	18	22	11	1.79
735913--735950	20	1.9	20	88	0	58	18	21	21	39	1.93
737004--737055	23	2.2	24	89	3	79	25	15	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739542--739639	19	5.7	19	67	22	81	43	18	24	13	1.85
739542--739635	33	2.8	33	95	0	170	43	18	24	13	1.86
739635--739677	20	2.2	20	87	4	61	16	18	23	41	1.89
739663--739696	14	2.4	14	85	0	50	8	23	20	47	1.78
739818--739854	14	2.6	14	91	0	65	45	24	0	29	1.53
741208--741274	21	3.2	21	68	4	55	19	20	35	23	1.95
741208--741330	42	2.9	41	79	7	104	22	17	36	23	1.94
743323--743455	20	7.1	19	78	13	123	46	19	21	12	1.82
743348--743412	33	1.9	34	90	3	105	41	23	24	10	1.86
743331--743433	53	1.9	54	82	5	129	44	21	22	11	1.84
743451--743531	19	4.5	19	73	16	73	9	17	23	49	1.76
744088--744141	20	2.7	20	97	0	99	25	18	24	31	1.97
744191--744231	21	2.0	21	85	0	55	34	31	17	17	1.93
744587--744733	21	6.8	21	74	14	86	22	20	23	34	1.97
744632--744684	26	2.0	26	100	0	106	18	18	22	39	1.92
744598--744726	68	1.9	69	91	3	215	21	20	22	35	1.96
744578--744733	42	3.6	42	74	13	145	23	20	21	34	1.97
745816--745957	42	3.4	42	90	1	234	35	26	19	19	1.95
745816--745982	21	8.0	21	74	11	148	34	25	19	19	1.96
745816--745982	42	4.0	41	86	4	221	34	25	19	19	1.96
748432--748468	3	12.3	3	100	0	74	0	32	0	67	0.91
749717--749780	26	2.5	26	84	5	76	18	3	12	65	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749743--749787	13	3.5	13	81	0	54	15	2	13	68	1.30
752192--752352	64	2.5	65	81	4	166	33	19	19	27	1.96
752966--753051	31	2.8	31	92	0	145	19	19	20	39	1.93
756876--757032	64	2.4	63	83	6	174	34	20	17	27	1.95
757646--757729	32	2.7	31	88	3	132	21	19	21	38	1.94
757646--757740	31	3.0	31	87	6	138	21	18	22	37	1.94
763001--763045	22	2.0	23	83	12	58	60	2	0	37	1.09
763833--763909	20	3.8	20	76	6	84	38	14	14	32	1.86
763879--764474	197	3.0	194	88	2	868	40	12	15	31	1.85
763879--764477	196	3.0	195	87	2	876	40	13	15	31	1.85
765555--766516	199	4.9	198	86	6	1238	40	13	12	33	1.83
766498--766537	21	2.0	20	85	5	53	45	20	5	30	1.72
766380--766839	131	3.5	130	86	4	626	43	12	10	33	1.77
767959--768049	29	3.1	30	82	7	107	40	3	8	47	1.51
767996--768092	30	3.4	28	77	9	79	43	8	8	40	1.65
768297--768324	12	2.3	12	100	0	56	39	0	7	53	1.28
768551--768663	39	2.9	38	81	5	129	32	20	22	24	1.98
769051--769511	99	4.4	102	81	10	449	31	3	10	55	1.49
769001--769511	202	2.4	207	81	9	547	30	3	11	55	1.51
771552--771601	23	2.2	23	82	7	57	48	2	6	44	1.39
771632--771709	27	2.9	27	94	0	138	42	16	2	38	1.62
773130--773196	10	6.1	10	71	19	53	58	14	11	14	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773140--773208	13	5.8	13	72	19	51	57	15	11	14	1.64
773130--773209	23	3.5	23	89	0	115	58	16	11	13	1.62
773164--773209	13	3.8	13	75	16	53	60	17	8	13	1.56
775353--775400	23	2.0	24	84	4	62	62	2	2	33	1.18
775440--775499	31	1.9	31	93	0	102	48	5	1	45	1.34
775495--775589	47	2.0	47	93	0	163	43	9	5	42	1.59
775659--775720	33	1.9	32	93	3	106	50	3	3	43	1.34
775845--775900	23	2.4	24	87	3	87	30	7	3	58	1.42
775858--775905	21	2.2	23	81	7	55	33	8	2	56	1.41
777271--777333	23	2.8	22	85	2	81	57	14	15	12	1.66

Tables:   1   2   3   4   5   6   7   8   9