Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1934717

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1002 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1844296--1844350
3
18.0
3
88
3
83
38
0
0
61
0.96
1856521--1856607
31
2.8
32
82
5
115
41
0
10
48
1.37
1860101--1860145
20
2.4
19
85
7
56
46
2
24
26
1.64
1863273--1863318
16
2.9
16
87
6
58
32
0
0
67
0.91
1865534--1865578
13
3.5
13
81
0
54
15
2
13
68
1.30
1870562--1870612
20
2.6
20
82
11
61
58
5
1
33
1.33
1870564--1870615
19
2.7
19
82
11
61
61
5
1
30
1.30
1870610--1870656
20
2.4
19
79
10
58
53
4
2
40
1.32
1873349--1873385
20
1.9
19
89
10
58
45
10
24
18
1.81
1873768--1873828
27
2.2
28
80
13
74
31
3
0
65
1.09
1879357--1879382
7
3.7
7
100
0
52
38
0
0
61
0.96
1879487--1879543
15
3.7
15
77
9
69
21
33
28
17
1.96
1880737--1880765
3
9.7
3
100
0
58
68
31
0
0
0.89
1888638--1888697
30
2.0
30
100
0
120
20
6
26
46
1.75
1890164--1890316
2
79.5
2
70
19
103
49
1
1
46
1.24
1890501--1890572
20
3.7
19
78
9
83
45
0
27
26
1.54
1890501--1890570
19
3.6
20
79
11
83
47
0
28
24
1.52
1890836--1890944
8
12.6
9
81
12
74
46
1
4
46
1.34
1890885--1890945
2
30.5
2
100
0
122
49
0
0
50
1.00
1900634--1900672
14
2.8
14
80
0
51
35
41
0
23
1.55
1900702--1900763
20
3.2
20
83
4
72
46
6
8
38
1.59
1900747--1900850
48
2.1
49
82
3
120
49
12
6
31
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1901265--1901332
2
34.0
2
84
11
86
51
2
1
44
1.25
1901245--1901334
19
4.8
20
80
11
70
51
4
4
40
1.42
1901265--1901334
19
3.7
19
83
12
92
52
2
1
42
1.24
1901416--1901480
7
9.3
7
77
0
58
46
32
0
21
1.52
1901825--1901860
15
2.4
15
90
9
56
50
5
2
41
1.40
1902252--1902285
15
2.3
15
89
0
50
38
0
2
58
1.13
1902338--1902374
2
19.0
2
91
5
58
54
0
0
45
1.00
1902458--1902518
7
8.7
7
78
7
52
47
29
0
22
1.52
1902458--1902518
14
4.4
14
77
8
61
47
29
0
22
1.52
1902462--1902518
21
2.8
20
78
5
60
45
29
0
24
1.53
1902686--1902732
14
3.7
14
71
26
50
51
4
0
44
1.21
1902684--1902733
23
2.1
24
96
3
93
48
4
0
48
1.20
1907955--1908088
66
2.0
67
95
1
243
34
13
24
27
1.93
1909187--1909281
42
2.3
42
83
1
120
37
21
14
26
1.92
1909152--1909281
41
3.1
41
78
5
136
36
18
13
31
1.90
1917198--1917235
19
2.0
19
100
0
76
26
15
31
26
1.96
1925710--1925812
43
2.4
42
82
4
118
30
17
23
29
1.97
1928696--1928734
16
2.3
18
82
13
55
30
20
25
23
1.98
1929302--1929353
23
2.4
22
87
12
72
21
15
30
32
1.94
1929302--1929360
23
2.7
21
82
10
57
20
18
28
32
1.96

Tables:   1   2   3   4   5   6   7   8   9

The End!