genome.fa.s9036.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1934717

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777276--777348	23	3.3	23	84	5	80	56	12	16	15	1.68
786955--787015	14	4.4	14	93	0	104	22	39	29	8	1.83
786955--787023	28	2.5	28	90	2	104	23	39	27	10	1.87
787094--787168	14	5.4	14	69	23	59	9	28	37	25	1.87
787211--787268	29	2.0	29	90	6	91	22	24	37	15	1.93
788391--788459	36	1.9	35	91	2	111	31	5	14	47	1.68
805365--805429	21	3.1	21	88	0	94	24	21	23	30	1.99
806137--806275	31	4.5	31	88	6	185	41	19	17	21	1.90
806383--806498	59	2.0	59	81	3	135	28	21	6	43	1.78
806555--806588	14	2.4	14	100	0	68	44	14	0	41	1.45
806555--806598	14	3.1	14	90	6	54	43	15	0	40	1.47
817457--817506	23	2.1	24	89	10	77	62	28	0	10	1.27
825051--825092	20	2.3	19	84	12	52	28	19	21	30	1.97
827590--827634	24	1.9	24	90	4	74	26	8	2	62	1.37
834534--834603	31	2.2	32	82	9	83	41	17	15	25	1.89
836215--836270	22	2.5	22	94	0	94	16	19	8	55	1.67
841735--841767	16	2.1	16	88	11	50	15	9	0	75	1.03
848103--848145	20	2.1	21	87	8	63	18	13	0	67	1.23
848102--848151	20	2.5	20	75	15	59	18	18	0	64	1.30
851966--851999	17	2.1	16	88	5	50	14	8	0	76	1.01
852321--852380	31	1.9	31	89	0	93	38	18	16	26	1.92
859060--859118	23	2.6	23	100	0	118	30	22	30	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870920--870947	3	9.3	3	100	0	56	67	0	32	0	0.91
872239--872330	48	1.9	48	91	4	150	38	7	9	44	1.66
876382--876469	23	4.1	20	78	11	70	17	26	34	22	1.96
876388--876471	22	3.8	22	77	13	75	16	25	34	23	1.95
888481--888521	18	2.3	18	87	8	57	70	0	0	29	0.87
893044--893076	15	2.2	16	89	10	52	33	6	6	54	1.50
900553--900648	41	2.3	43	83	7	117	32	14	5	47	1.66
900503--900763	85	3.1	82	78	11	242	26	16	6	50	1.69
900660--900727	22	3.1	22	65	23	54	20	23	5	50	1.70
900511--900810	43	7.0	44	78	13	227	26	17	7	49	1.71
900766--900838	36	2.0	36	87	10	105	24	19	10	45	1.82
900803--900899	43	2.2	43	82	8	108	26	19	7	46	1.76
900833--900916	44	1.9	43	85	2	114	28	20	3	47	1.66
902182--902221	20	1.9	20	85	10	53	67	5	0	27	1.11
907121--907186	22	3.1	22	77	12	66	74	6	1	18	1.10
907119--907183	30	2.2	30	81	15	73	73	6	1	18	1.11
907152--907186	11	3.2	11	87	0	52	74	5	0	20	1.02
909396--909513	45	2.6	44	85	2	155	24	25	10	39	1.86
909687--910192	54	9.4	54	90	1	694	29	16	22	31	1.96
909751--910167	27	15.5	27	61	24	98	30	15	22	32	1.95
917576--917625	26	1.9	27	84	8	68	38	0	24	38	1.56
918721--918845	31	4.0	31	90	2	180	20	16	22	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920331--920364	17	2.1	17	88	5	52	29	14	17	38	1.90
925102--925152	26	1.9	27	84	4	68	70	3	13	11	1.29
926236--926263	14	2.0	14	100	0	56	50	7	0	42	1.30
926522--926560	9	4.2	9	80	6	51	2	30	17	48	1.61
927856--927889	4	8.5	4	87	12	52	23	2	0	73	0.97
931305--931360	29	1.9	29	85	0	76	60	0	1	37	1.07
937734--937766	16	2.0	17	88	5	50	24	9	15	51	1.72
941658--941696	20	2.0	20	89	0	60	20	5	23	51	1.67
941849--941888	21	1.9	21	89	0	62	10	25	40	25	1.86
941871--941931	20	2.9	21	87	7	79	18	26	34	21	1.96
955693--955744	26	2.0	26	81	7	61	59	11	9	19	1.59
956779--956836	21	2.8	20	80	10	55	65	0	18	15	1.27
956792--956836	22	2.1	22	87	4	65	64	0	20	15	1.29
967928--968159	111	2.1	111	83	4	281	34	16	17	31	1.93
971288--971374	31	2.9	30	84	5	115	58	4	9	27	1.49
972576--972628	20	2.5	20	75	24	56	60	7	0	32	1.25
972586--972630	23	2.1	20	88	12	63	62	6	0	31	1.21
973191--973297	31	3.4	31	83	3	108	32	30	24	12	1.92
974580--974629	23	2.2	23	96	0	91	26	26	4	44	1.72
976926--976963	20	1.9	20	100	0	76	23	13	15	47	1.81
976928--976973	20	2.3	20	88	0	65	26	13	15	45	1.82
977042--977089	18	2.7	18	100	0	96	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977077--977137	24	2.5	24	100	0	122	34	13	13	39	1.83
978497--978578	3	27.7	3	93	2	139	68	1	29	1	1.05
984943--984982	18	2.3	18	87	12	57	32	20	12	35	1.90
991767--991806	22	1.9	22	85	10	57	50	7	2	40	1.44
1011867--1011901	18	2.1	18	89	10	56	60	0	8	31	1.27
1013683--1013730	24	2.0	24	91	0	78	27	31	10	31	1.90
1014075--1014133	29	2.2	26	76	21	68	25	11	8	54	1.65
1014231--1014293	23	3.0	20	71	15	63	26	4	15	52	1.63
1017989--1018168	88	2.0	89	95	4	326	30	13	14	41	1.84
1019871--1020062	104	1.9	102	79	6	217	34	13	14	38	1.84
1022582--1022615	14	2.4	14	90	0	50	47	26	0	26	1.53
1023238--1023309	38	1.9	37	83	5	92	48	4	2	44	1.36
1023670--1023705	19	1.9	19	94	5	65	47	11	22	19	1.80
1030585--1030629	20	2.2	20	96	0	81	26	35	13	24	1.92
1032341--1032420	20	3.9	20	82	9	99	12	23	23	40	1.89
1032384--1032455	22	3.4	22	73	11	87	18	19	25	37	1.94
1032405--1032473	19	3.5	19	73	11	66	18	18	21	40	1.91
1032364--1032473	41	2.7	41	92	4	177	17	20	23	39	1.92
1033080--1033113	12	3.1	11	91	8	52	0	17	52	29	1.45
1033193--1033260	19	3.5	19	80	4	91	39	20	20	19	1.92
1033190--1033280	39	2.3	40	94	1	157	38	21	18	20	1.93
1033278--1033311	17	2.0	17	100	0	68	47	17	23	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1033295--1033423	41	3.1	41	98	0	249	35	25	20	18	1.95
1033350--1033485	62	2.2	62	97	0	254	32	27	19	21	1.97
1033269--1033464	82	2.4	82	78	5	247	37	25	19	18	1.94
1033412--1033489	41	1.9	41	97	0	147	33	25	20	20	1.97
1033229--1033489	103	2.6	103	86	6	349	36	24	19	19	1.95
1036336--1036509	37	4.4	37	78	17	174	45	3	6	44	1.46
1036335--1036509	39	4.5	37	83	9	199	45	3	6	44	1.45
1036450--1036556	50	2.2	49	89	3	169	45	1	5	46	1.37
1036593--1036636	7	6.6	7	80	19	58	13	0	2	84	0.73
1036585--1036635	27	1.9	26	88	11	77	13	1	1	82	0.85
1036593--1036636	13	3.3	13	84	15	63	13	0	2	84	0.73
1044940--1045017	25	3.2	24	92	5	131	46	14	14	25	1.82
1046854--1046887	2	17.5	2	93	6	61	52	0	0	47	1.00
1046872--1046997	34	3.8	34	77	9	125	42	2	7	47	1.43
1046905--1046995	33	2.7	33	86	8	114	46	2	7	43	1.44
1048187--1048224	15	2.6	15	87	4	51	21	5	0	73	1.02
1048187--1048242	27	2.0	28	82	6	69	25	3	3	67	1.22
1048233--1048266	15	2.1	16	89	10	52	20	11	0	67	1.21
1048336--1048382	19	2.5	19	96	0	85	38	8	10	42	1.70
1049571--1049600	2	15.0	2	100	0	60	50	0	0	50	1.00
1050165--1050918	255	3.0	254	97	0	1388	30	30	14	24	1.94
1052412--1052470	21	2.8	22	73	17	61	67	1	6	23	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058473--1058635	64	2.5	62	79	11	170	28	15	26	30	1.96
1058582--1058632	19	2.7	19	85	8	70	25	15	35	23	1.94
1058646--1058685	21	1.9	21	94	0	71	22	15	30	32	1.94
1059305--1059411	34	3.1	34	87	0	151	36	1	4	57	1.31
1059930--1060038	42	2.6	41	86	5	155	23	24	32	19	1.98
1059930--1060041	21	5.3	21	82	12	131	23	25	32	19	1.98
1060048--1060095	21	2.3	21	88	0	69	20	12	41	25	1.87
1061833--1061899	36	1.9	33	82	8	80	62	2	0	34	1.10
1064140--1064192	26	2.0	26	85	0	70	66	0	5	28	1.15
1064285--1064314	15	1.9	16	93	6	53	76	3	6	13	1.11

Tables:   1   2   3   4   5   6   7   8   9