genome.fa.s9065.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009065.1 Hibiscus syriacus cultivar Beakdansim tig00112488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198333

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177421--177465	18	2.4	18	88	3	63	28	2	4	64	1.25
179096--179233	2	74.0	2	73	13	125	48	0	0	51	1.00
179096--179220	37	3.2	38	82	5	153	48	0	0	52	1.00
179249--179285	12	3.0	12	92	4	56	10	18	54	16	1.71
185745--185865	59	2.1	59	90	0	188	34	22	17	25	1.95
190525--190575	20	2.5	20	84	6	59	39	0	23	37	1.55
191891--192090	24	8.3	23	72	10	109	19	22	20	37	1.94
191890--192006	49	2.4	48	81	9	148	18	22	20	38	1.93
196193--196254	21	3.0	21	95	0	106	20	27	22	29	1.99
196395--196464	36	1.9	35	83	13	88	27	17	30	25	1.97
213333--213370	2	19.0	2	100	0	76	50	0	0	50	1.00
214318--215012	349	2.0	346	97	2	1306	28	17	23	31	1.97
215089--215207	32	3.7	32	87	2	150	35	17	16	30	1.93
220568--220637	28	2.6	27	82	8	81	40	22	21	15	1.91
220577--220637	28	2.3	26	88	5	86	39	22	22	14	1.91
221799--221842	20	2.2	20	84	12	54	34	13	6	45	1.70
224822--224934	57	2.0	56	98	1	217	24	24	11	38	1.89
231074--231218	64	2.3	64	83	4	177	28	21	19	31	1.97
233202--233241	21	1.9	21	89	0	62	55	5	10	30	1.54
237066--237144	23	3.6	23	71	8	74	24	24	24	27	2.00
239424--239568	64	2.3	64	84	4	186	27	24	19	28	1.98
239604--239670	19	3.5	19	97	0	125	20	31	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242906--243002	46	2.1	46	88	0	140	17	23	24	34	1.96
242906--243007	23	4.4	23	81	0	114	16	22	26	34	1.95
242963--243015	23	2.3	23	86	0	70	16	22	28	32	1.96
248905--249255	99	3.5	99	87	4	434	21	20	25	33	1.97
250353--250418	16	4.2	15	78	5	69	0	16	1	81	0.76
250353--250418	22	3.0	21	80	12	71	0	16	1	81	0.76
250363--250414	8	6.4	8	78	12	61	0	15	1	82	0.75
250353--250414	25	2.5	24	78	14	65	0	16	1	82	0.75
250394--250514	62	1.9	64	83	6	158	14	21	11	52	1.72
267889--268099	41	5.2	41	82	2	237	34	15	19	29	1.93
267895--268047	80	1.9	80	89	0	234	34	13	21	30	1.92
269989--270024	2	18.0	2	100	0	72	50	0	0	50	1.00
272297--272325	2	14.5	2	100	0	58	48	0	0	51	1.00
280459--280497	20	2.0	20	89	0	60	33	10	23	33	1.88
286789--286826	20	1.9	20	88	0	58	34	18	10	36	1.85
291218--291336	60	2.0	60	100	0	238	28	20	21	29	1.98
297130--297229	34	3.0	34	86	1	121	37	11	11	41	1.76
297645--297671	12	2.2	12	100	0	54	18	0	22	59	1.38
300141--300267	60	2.1	60	85	2	166	35	21	18	25	1.95
303264--303316	21	2.5	21	84	0	70	20	26	18	33	1.96
303306--303521	20	10.6	20	79	4	148	33	19	19	27	1.96
303292--303379	41	2.1	42	79	6	99	35	19	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303306--303521	41	5.3	41	79	5	179	33	19	19	27	1.96
303306--303539	61	3.8	60	70	11	172	33	20	19	26	1.96
304080--304140	14	4.0	14	73	19	50	44	22	22	9	1.82
304059--304151	33	2.8	33	90	1	132	43	24	21	10	1.84
304152--304214	33	1.9	33	90	0	99	12	20	20	46	1.83
305940--306217	94	3.1	93	87	7	410	21	12	19	47	1.81
306308--306369	20	3.2	20	88	4	99	51	16	20	11	1.74
306306--306429	33	3.5	35	82	11	139	49	21	20	8	1.76
306306--306395	19	4.9	19	77	15	109	48	18	22	10	1.77
306398--306435	20	1.9	20	94	0	67	50	26	15	7	1.72
306458--306542	19	4.6	19	70	16	72	12	21	20	45	1.84
306441--306518	33	2.4	33	93	0	129	10	21	23	44	1.82
306974--307062	43	2.1	43	81	6	101	22	34	20	22	1.96
308413--308448	14	2.6	14	95	0	63	33	0	22	44	1.53
308555--308617	19	3.6	19	71	20	64	42	20	23	12	1.86
308587--308631	19	2.3	18	85	11	54	42	26	17	13	1.86
308627--308711	19	4.7	19	72	18	56	11	24	20	43	1.85
308664--308757	20	4.7	20	72	13	68	21	20	23	35	1.96
311244--311295	24	2.2	24	82	0	59	36	21	19	23	1.95
312141--312441	20	14.9	20	80	7	319	35	16	20	26	1.94
312141--312415	81	3.4	80	86	7	348	36	16	20	26	1.93
312152--312388	41	5.8	41	90	3	356	38	16	21	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312141--312429	61	4.8	59	80	8	298	35	16	20	26	1.94
312140--312514	20	18.3	20	75	14	162	32	17	19	29	1.95
312511--312577	21	3.2	21	93	0	107	35	17	28	17	1.93
314753--314779	4	6.8	4	100	0	54	0	22	0	77	0.76
325823--326089	133	2.0	133	98	1	518	34	17	12	35	1.88
331445--331482	20	1.9	20	88	0	58	21	10	36	31	1.87
335433--335487	21	2.6	21	85	0	74	14	20	38	27	1.91
335472--335513	21	2.0	21	85	0	57	26	19	26	28	1.98
337755--337786	16	2.0	16	93	0	55	28	18	18	34	1.95
347762--347880	21	5.7	21	75	7	80	38	18	38	4	1.70
347807--347883	21	3.7	21	83	0	100	41	18	36	3	1.69
348222--348460	43	5.5	42	75	11	198	29	23	19	28	1.98
348238--348490	86	2.9	86	78	9	214	28	22	18	30	1.98
353991--354054	23	2.9	22	77	6	76	25	28	25	21	1.99
356410--356465	23	2.4	23	90	0	85	19	50	19	10	1.77
356419--356470	13	4.2	13	73	14	56	19	44	21	15	1.87
357743--357778	18	2.0	18	88	0	54	52	0	16	30	1.44
358936--359001	24	2.8	24	85	0	87	18	10	18	53	1.72
360534--360599	24	2.8	24	85	0	87	53	18	10	18	1.72
360541--360644	24	4.3	24	68	16	81	48	16	14	21	1.81
361757--361792	18	2.0	18	88	0	54	30	16	0	52	1.44
363117--363161	13	3.5	13	87	0	72	17	22	44	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364146--364267	40	3.0	41	91	4	205	23	14	26	35	1.94
364372--364657	45	6.4	45	90	0	430	43	5	19	31	1.75
365711--365758	16	3.1	16	81	3	53	50	0	4	45	1.21
371079--371303	30	7.5	30	73	8	102	58	8	12	20	1.60
372538--372566	3	10.0	3	92	7	51	68	0	0	31	0.89
372728--372850	64	1.9	65	84	1	167	25	16	30	27	1.96
372815--373526	126	5.7	126	88	0	1014	26	17	25	30	1.97
373785--373873	32	2.8	32	85	10	119	30	24	15	29	1.96
374015--374073	25	2.5	22	76	15	64	47	1	13	37	1.53
377916--377985	27	2.6	27	83	0	95	54	10	18	17	1.70
378497--378558	32	1.9	32	83	6	81	58	9	16	16	1.63
378853--378923	37	1.9	37	94	0	124	36	19	18	25	1.94
379542--379650	21	5.2	20	71	21	62	24	4	1	68	1.18
379537--379595	30	2.0	30	86	6	84	30	5	1	62	1.26
379549--379608	9	6.6	9	73	17	52	30	1	1	66	1.11
379608--379639	15	2.1	15	100	0	64	12	12	0	75	1.06
379603--379656	21	2.6	19	78	16	54	14	7	3	74	1.18
382955--383010	29	2.0	28	82	10	69	76	5	16	1	1.05
385436--385860	106	4.0	106	94	0	726	35	23	18	22	1.96
386588--386694	37	2.9	37	84	0	151	41	15	14	28	1.86
387343--387384	18	2.2	20	88	12	63	30	0	2	66	1.04
387308--387370	32	2.0	32	84	12	85	33	4	1	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387326--387383	9	6.3	9	75	18	57	32	1	1	63	1.14
387383--387414	15	2.1	15	100	0	64	12	12	0	75	1.06
387378--387431	21	2.6	19	78	16	54	14	7	3	74	1.18
389416--389615	30	6.7	30	73	3	152	55	11	14	19	1.68
396591--396639	20	2.5	20	93	0	80	10	20	42	26	1.84
396959--397004	22	2.0	23	83	4	58	63	10	4	21	1.44
397148--397206	3	19.3	3	86	10	75	28	0	5	66	1.13
401891--401946	20	2.8	20	89	2	78	41	7	14	37	1.73
404687--404756	19	3.5	20	78	7	72	35	7	18	38	1.78
407919--407944	12	2.2	12	100	0	52	38	19	0	42	1.51

Tables:   1   2   3   4   5   6