genome.fa.s9065.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009065.1 Hibiscus syriacus cultivar Beakdansim tig00112488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198333

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410048--410222	88	2.0	88	100	0	350	28	17	21	33	1.95
419272--419388	36	3.2	34	87	10	162	33	17	11	37	1.86
419293--419410	36	3.2	36	83	4	148	31	18	11	38	1.87
419537--419827	66	4.4	66	84	6	297	24	21	13	40	1.89
419587--419696	30	3.5	30	65	29	75	26	22	11	39	1.89
419937--420131	91	2.2	88	84	4	248	25	30	17	26	1.97
428173--428278	40	2.7	40	88	1	151	24	16	8	50	1.72
430678--430712	18	1.9	18	88	0	52	65	0	11	22	1.24
434279--434338	21	2.9	21	82	0	75	38	18	15	28	1.91
443058--443558	46	11.0	46	84	6	538	23	21	13	41	1.88
443064--443556	227	2.2	226	85	6	640	23	22	13	41	1.89
443069--443562	182	2.7	176	89	5	695	23	21	13	41	1.89
443558--444201	81	8.0	81	87	0	892	31	20	12	35	1.90
453070--453157	9	9.3	9	80	8	95	15	28	28	27	1.96
453069--453157	19	4.7	19	79	8	101	16	28	28	26	1.97
453069--453153	29	3.0	28	86	5	116	16	27	28	28	1.97
453079--453168	28	3.2	28	80	3	72	16	31	28	23	1.96
453186--453215	13	2.2	14	94	5	53	16	26	30	26	1.97
453186--453215	7	4.4	7	91	8	53	16	26	30	26	1.97
456930--456979	15	3.2	17	75	16	54	8	18	0	74	1.06
469455--469705	99	2.5	99	87	3	346	31	18	16	33	1.93
472186--472237	8	6.4	8	75	20	54	71	1	1	25	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472205--472300	15	6.3	14	72	19	61	78	1	3	17	0.95
472205--472299	29	3.3	28	77	15	88	78	1	3	16	0.93
472246--472288	8	5.6	8	81	8	54	81	0	0	18	0.69
472297--472326	13	2.4	13	94	5	53	66	13	0	20	1.24
472682--472801	3	40.7	3	77	9	97	68	1	2	27	1.12
472676--472732	18	3.2	16	78	11	51	78	0	3	17	0.88
472676--472802	26	4.8	26	73	15	91	70	1	2	25	1.09
472806--472850	2	23.5	2	91	8	76	51	0	0	48	1.00
472737--472851	12	11.1	11	77	21	74	59	1	1	37	1.18
472840--472872	15	2.3	15	89	5	50	63	3	3	30	1.24
472866--472911	17	2.7	17	90	6	67	71	0	0	28	0.86
473388--473418	16	2.0	15	93	6	53	9	19	12	58	1.62
477252--477309	21	2.7	21	97	2	107	15	24	17	43	1.87
477246--477319	21	3.5	21	88	3	96	18	25	18	36	1.94
477309--477360	21	2.5	21	87	3	70	38	17	23	21	1.93
477328--477449	41	3.2	39	75	17	112	35	23	20	20	1.96
477349--477516	20	8.6	20	70	16	70	34	25	17	23	1.96
477343--477408	33	2.0	33	93	0	114	34	22	22	19	1.96
477379--477516	41	3.4	41	78	2	161	35	25	15	23	1.94
477673--477716	22	2.0	22	90	0	70	22	45	13	18	1.84
477966--478039	20	3.8	20	78	1	78	14	18	18	47	1.83
479790--479976	93	2.0	91	85	10	254	21	13	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480177--480243	20	3.4	20	77	2	64	38	22	22	16	1.92
480232--480290	14	3.9	14	72	20	55	50	23	15	10	1.74
480220--480307	33	2.7	33	96	0	158	50	21	17	11	1.77
480216--480312	19	5.6	19	69	22	88	47	21	18	12	1.81
480324--480382	14	3.9	14	72	20	55	11	16	22	49	1.78
480319--480398	33	2.4	33	93	0	142	12	18	21	47	1.81
480340--480398	19	3.4	19	68	22	65	15	18	18	47	1.83
480383--480477	20	4.8	20	90	1	129	16	26	24	32	1.96
480465--480503	20	2.0	20	89	0	60	25	15	28	30	1.96
480403--480497	40	2.4	40	85	3	120	17	22	26	33	1.96
480371--480497	60	2.1	59	81	4	139	17	22	25	34	1.96
480853--480921	21	3.3	20	74	6	66	24	40	15	18	1.90
480843--480933	41	2.2	42	86	2	130	21	40	15	21	1.90
482341--482379	14	2.8	14	84	0	51	35	0	17	46	1.49
482517--482578	20	3.2	20	90	4	99	53	12	17	16	1.73
482516--482584	19	3.6	19	88	3	102	52	13	18	15	1.75
482622--482717	20	4.8	20	72	12	81	18	19	19	41	1.90
482931--482980	20	2.5	20	80	0	73	22	18	22	38	1.94
483844--483897	24	2.2	24	86	0	72	24	14	20	40	1.90
486364--486494	19	7.7	19	64	23	85	44	18	22	14	1.86
486364--486490	33	3.8	33	88	4	202	44	18	22	14	1.86
486365--486489	66	1.9	66	96	0	232	44	18	22	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486490--486535	19	2.4	19	85	0	65	15	13	26	45	1.82
486505--486626	33	3.7	33	85	2	165	12	18	21	47	1.81
486557--486613	14	3.7	14	70	20	51	12	24	19	43	1.85
486737--486773	14	2.6	14	82	0	56	43	24	2	29	1.68
488120--488186	21	3.2	21	68	4	55	19	20	35	23	1.95
488460--488642	91	2.0	89	88	8	271	46	18	12	21	1.82
490324--490445	20	6.8	19	71	20	102	45	19	23	11	1.83
490373--490428	14	3.6	14	74	21	58	42	23	25	8	1.82
490349--490445	33	2.9	33	95	1	167	43	21	24	10	1.84
490448--490492	19	2.4	19	84	0	54	11	13	22	53	1.71
491045--491156	20	5.6	20	84	4	82	21	20	20	37	1.94
491063--491156	41	2.3	40	88	1	134	20	21	19	39	1.93
491037--491219	41	4.5	41	75	10	126	28	18	20	32	1.96
491153--491208	20	2.7	21	80	5	69	42	16	21	19	1.89
491065--491197	61	2.2	61	79	5	144	26	21	19	33	1.97
491146--491218	21	3.5	21	79	3	76	36	17	21	23	1.94
491210--491256	20	2.3	20	88	0	76	29	19	23	27	1.98
491248--491297	20	2.4	21	86	3	66	20	24	16	40	1.91
491289--491341	21	2.5	22	81	6	74	35	18	24	20	1.95
491795--491852	22	2.7	22	83	2	73	32	1	3	62	1.22
495830--496664	84	10.0	84	79	4	733	30	23	19	26	1.98
495830--496664	168	5.0	164	82	3	877	30	23	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495830--496679	248	3.4	246	78	6	784	30	23	19	26	1.98
496888--496935	13	3.6	13	86	11	62	29	0	4	66	1.10
500160--500206	19	2.4	19	82	10	51	36	4	2	57	1.30
500403--500455	21	2.5	21	81	6	72	20	26	18	33	1.96
500445--500519	21	3.6	21	89	1	107	38	17	22	21	1.93
501113--501157	19	2.4	19	92	0	72	48	26	15	8	1.74
501175--501211	14	2.6	14	100	0	74	8	27	24	40	1.83
501203--501259	20	2.8	20	81	0	60	15	21	17	45	1.85
501324--501378	25	2.2	26	81	15	71	20	7	21	50	1.71
503403--503469	21	3.2	21	66	6	55	23	35	20	19	1.95
503384--503469	42	2.0	42	80	8	95	22	37	19	20	1.95
504821--504856	14	2.6	14	95	0	63	30	0	25	44	1.54
504923--504972	19	2.6	19	90	0	73	46	18	24	12	1.82
504998--505125	33	3.9	32	82	9	150	15	23	20	40	1.90
504994--505092	19	5.7	19	65	22	65	14	23	20	42	1.88
504991--505124	66	2.0	67	89	1	207	17	23	20	39	1.92
507577--507630	24	2.2	24	90	0	81	40	20	16	22	1.91
508447--508538	20	4.6	20	73	2	76	39	21	18	20	1.93
508752--508839	20	4.4	20	77	5	106	38	22	21	17	1.93
510947--511000	20	2.7	20	85	0	72	38	24	22	14	1.91
511004--511093	14	5.8	14	74	21	81	47	23	17	11	1.79
510991--511098	33	3.3	33	96	1	191	47	22	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511105--511154	19	2.6	19	93	0	91	14	22	20	44	1.86
511105--511193	19	4.6	19	84	4	88	14	22	22	40	1.90
511675--511719	18	2.5	18	92	0	81	13	13	44	28	1.81
513034--513092	20	3.0	20	87	0	73	42	22	18	16	1.89
513356--513399	22	2.0	22	90	0	70	18	13	45	22	1.84
513588--513639	20	2.6	20	93	0	86	25	21	28	25	1.99
513608--513702	41	2.3	41	80	3	102	21	20	23	35	1.96
513752--513792	21	2.0	21	85	0	55	34	29	17	19	1.94
514496--514685	20	9.5	20	87	3	206	36	26	17	20	1.94
515367--515413	24	2.0	24	87	8	69	25	14	21	38	1.92

Tables:   1   2   3   4   5   6