genome.fa.s9065.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009065.1 Hibiscus syriacus cultivar Beakdansim tig00112488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198333

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898471--898559	42	2.1	42	78	0	97	25	24	21	28	1.99
899445--899479	18	1.9	18	88	0	52	45	20	0	34	1.51
901610--901655	23	2.0	23	91	8	76	54	8	10	26	1.64
909377--909459	23	3.9	21	81	7	78	25	31	24	19	1.98
915874--916305	216	2.0	216	95	0	783	37	17	21	24	1.94
926625--926686	32	1.9	32	90	0	97	6	27	30	35	1.82
927983--928012	10	3.0	10	90	0	51	66	3	0	30	1.07
929296--929332	19	1.9	19	88	0	56	43	0	5	51	1.24
930777--930865	19	4.3	20	77	18	101	30	28	5	35	1.80
931652--931689	20	1.9	20	89	10	60	50	13	18	18	1.78
933361--933390	7	4.3	7	100	0	60	16	43	13	26	1.85
935618--935650	5	6.6	5	92	0	57	42	0	0	57	0.98
936724--936844	33	3.4	38	80	13	157	15	10	35	38	1.83
938473--938535	31	2.0	31	96	0	117	41	11	15	31	1.83
938906--939004	23	4.2	24	76	3	94	43	12	13	31	1.80
938906--939003	47	2.1	47	86	0	133	43	12	13	30	1.80
939914--939948	18	1.9	18	88	0	52	20	34	25	20	1.96
941358--941453	31	3.1	31	80	0	111	37	20	16	25	1.93
942376--942501	66	1.9	67	82	14	163	27	21	19	31	1.97
947725--947809	36	2.4	36	93	0	143	29	34	4	31	1.78
953390--953474	36	2.4	36	93	0	143	29	34	4	31	1.78
953793--953856	23	2.8	23	87	0	92	26	25	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953872--954074	103	2.0	104	95	1	363	35	22	13	27	1.92
954024--954117	44	2.2	44	98	1	181	34	23	13	28	1.93
954885--955108	64	3.5	64	79	6	197	29	18	18	33	1.95
956477--956529	18	2.9	18	97	0	97	24	33	22	18	1.97
956967--957008	22	2.0	21	85	4	57	50	21	4	23	1.68
957519--957585	24	2.8	24	75	11	75	37	14	17	29	1.91
959579--959617	21	1.9	21	94	5	71	43	15	0	41	1.46
959707--959733	14	1.9	14	100	0	54	29	0	0	70	0.88
967789--968008	109	2.0	109	100	0	440	42	11	14	31	1.81
982890--983161	138	2.0	135	95	4	492	26	12	23	38	1.90
989735--989835	52	1.9	53	85	2	141	28	17	10	42	1.83
998152--998200	22	2.2	22	100	0	98	55	18	10	16	1.69
1004050--1004109	21	2.7	23	80	17	72	35	23	15	26	1.94
1004732--1004804	30	2.4	30	88	4	103	32	16	19	31	1.94
1032425--1032498	40	1.9	38	81	10	89	47	9	17	25	1.78
1037651--1037682	5	6.4	5	100	0	64	56	0	0	43	0.99
1039176--1039506	163	2.0	163	94	1	583	41	19	16	22	1.90
1044325--1044379	20	2.8	20	88	0	83	21	25	23	29	1.99
1047005--1047093	20	4.4	21	73	17	82	33	11	24	30	1.90
1047579--1047641	15	4.2	15	73	4	56	26	9	20	42	1.83
1047771--1047828	23	2.5	23	77	0	71	27	17	20	34	1.95
1047816--1047873	24	2.5	24	88	2	91	25	24	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058491--1058545	21	2.6	21	91	0	92	25	20	23	30	1.98
1059597--1059677	32	2.5	32	82	4	101	40	14	16	28	1.88
1060596--1060620	13	1.9	13	100	0	50	44	8	8	40	1.63
1066276--1066331	20	2.8	20	72	17	53	28	28	25	17	1.98
1066276--1066334	21	3.0	20	72	16	59	28	28	23	18	1.98
1068430--1068471	21	2.0	21	90	0	66	19	38	26	16	1.92
1070226--1070488	42	6.3	42	93	0	449	21	19	23	35	1.96
1071456--1071489	16	2.2	15	89	5	50	14	32	0	52	1.42
1072670--1072699	15	2.0	15	93	0	51	10	13	3	73	1.21
1073179--1073209	15	2.1	15	93	0	53	29	12	0	58	1.35
1073810--1073835	2	13.0	2	100	0	52	50	0	0	50	1.00
1079474--1079761	58	5.1	56	77	9	255	32	9	17	40	1.81
1079475--1079761	110	2.5	110	84	5	322	32	9	17	41	1.81
1079757--1079869	42	2.7	41	77	9	122	25	19	23	31	1.98
1080056--1080423	134	2.7	136	89	2	535	35	17	22	25	1.95
1080459--1080655	39	5.1	40	87	7	284	32	16	16	35	1.91
1080679--1080797	60	2.0	60	85	5	159	30	29	13	26	1.94
1081883--1081933	24	2.0	25	85	7	68	68	1	11	17	1.29
1084593--1084629	18	2.1	18	100	0	74	24	21	16	37	1.93
1090026--1090091	32	2.1	32	88	2	98	50	10	15	24	1.75
1091879--1091964	21	4.1	21	93	0	145	27	25	22	24	1.99
1091995--1092049	21	2.6	21	88	0	83	23	20	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092068--1092155	21	4.2	21	76	12	83	26	22	18	32	1.97
1092067--1092155	42	2.2	40	82	10	108	26	22	17	32	1.97
1092238--1092330	6	15.5	6	100	0	186	33	50	16	0	1.45
1092843--1092874	6	5.5	6	92	7	57	0	15	50	34	1.45
1092843--1092874	11	2.8	12	90	9	57	0	15	50	34	1.45
1092971--1093082	42	2.7	42	95	0	197	35	24	18	21	1.95
1092964--1093088	21	5.9	20	73	14	101	34	23	20	22	1.97
1093052--1093107	21	2.8	20	78	10	69	35	19	21	23	1.96
1093126--1093200	21	3.6	21	83	0	96	29	25	18	26	1.98
1093209--1093262	21	2.6	21	90	0	81	22	22	25	29	1.99
1095022--1095093	37	2.0	37	83	8	94	48	4	1	45	1.30
1098255--1098443	94	2.0	94	100	0	378	28	15	12	42	1.84
1105326--1105485	80	2.0	80	100	0	320	37	6	20	36	1.78
1119904--1120304	163	2.5	159	85	4	527	45	5	20	28	1.73
1124629--1124714	41	2.1	41	100	0	172	38	17	24	19	1.93
1124932--1125070	42	3.3	41	79	7	147	33	18	18	28	1.95
1126402--1126483	41	2.0	41	83	7	103	32	18	18	30	1.95
1126433--1126813	195	2.0	187	88	4	564	32	17	18	32	1.94
1129287--1129323	18	2.1	17	95	5	65	8	5	16	70	1.30
1135362--1135495	59	2.3	59	84	0	160	28	18	23	29	1.98
1137997--1138048	23	2.3	23	100	0	104	42	15	15	26	1.87
1138866--1138987	59	2.1	59	85	0	163	30	18	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150087--1150134	21	2.3	21	88	0	69	41	20	35	2	1.64
1150052--1150135	21	3.9	21	73	6	53	41	19	36	2	1.64
1150546--1150742	85	2.3	85	79	5	209	35	25	15	22	1.94
1150546--1150788	43	5.7	43	82	3	231	34	25	15	23	1.94
1150589--1150798	85	2.5	85	81	3	226	34	25	14	25	1.94
1152460--1152563	40	2.6	40	92	1	174	52	13	11	22	1.72
1154485--1154519	15	2.3	15	90	0	52	8	17	65	8	1.44
1156362--1156406	19	2.4	18	82	7	54	46	4	2	46	1.35
1157339--1157392	25	2.1	27	83	12	71	42	0	3	53	1.18
1157485--1157594	54	2.0	54	89	0	166	29	20	17	33	1.95
1158385--1158423	20	1.9	20	84	5	51	66	5	2	25	1.25
1160246--1160287	23	2.0	20	82	17	50	28	23	0	47	1.52
1165257--1165319	27	2.3	27	100	0	126	26	11	17	44	1.82
1167596--1167649	21	2.6	21	81	0	63	24	31	27	16	1.96
1170359--1170446	23	4.0	22	72	18	83	26	19	25	29	1.98
1179988--1180070	23	3.7	23	78	12	82	26	21	25	26	2.00
1183121--1183156	17	2.1	17	89	0	54	63	22	0	13	1.29
1185097--1185159	20	2.9	21	79	9	65	15	25	34	23	1.95
1188963--1189002	21	1.9	21	85	10	55	35	10	2	52	1.48
1196451--1196493	19	2.3	19	91	0	68	30	41	20	6	1.79
1197472--1197545	34	2.2	34	87	4	105	36	25	1	36	1.65
1197929--1198169	129	1.9	124	88	5	358	35	15	13	35	1.86

Tables:   1   2   3   4   5   6

The End!