genome.fa.s9070.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009070.1 Hibiscus syriacus cultivar Beakdansim tig00112498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2268343

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1013 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315575--315828	40	6.3	40	85	5	309	21	19	22	37	1.95
315863--315932	21	3.3	21	72	7	52	27	21	20	31	1.98
322140--322181	15	2.7	16	81	7	59	19	7	2	71	1.20
323012--323036	3	8.3	3	100	0	50	0	32	0	68	0.90
325557--325764	75	2.8	75	85	5	260	23	31	23	21	1.98
331534--331597	20	3.0	20	75	8	65	21	34	26	17	1.95
331534--331595	23	2.9	21	78	7	63	22	35	25	16	1.94
333835--333941	53	2.0	53	100	0	214	40	1	26	31	1.67
334237--334444	75	2.8	75	87	3	276	24	31	23	21	1.98
338818--338878	16	3.8	16	100	0	122	6	13	24	55	1.61
338830--338882	10	6.1	10	68	31	50	7	11	22	58	1.57
342523--342570	19	2.5	20	82	3	62	50	6	10	33	1.62
343973--344070	42	2.5	39	83	6	117	21	34	26	17	1.95
344005--344074	21	3.4	21	75	11	74	17	38	25	18	1.92
344408--344491	34	2.5	34	94	0	141	28	19	23	28	1.98
349296--349335	21	1.9	21	85	10	55	40	5	2	52	1.37
349655--349714	29	2.1	29	90	0	93	40	11	11	36	1.78
350095--350158	32	2.0	32	87	0	92	28	21	31	18	1.97
361404--361436	13	2.6	13	85	4	50	27	6	0	66	1.15
361450--361493	16	2.6	17	80	13	56	63	0	0	36	0.95
361458--361510	16	3.3	16	77	15	56	64	1	0	33	1.05
362016--362091	31	2.5	30	86	2	116	32	14	28	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364403--364461	31	1.9	31	100	0	118	35	16	23	23	1.95
372093--372135	2	21.5	2	100	0	86	51	0	0	48	1.00
374739--374769	2	15.5	2	100	0	62	48	0	0	51	1.00
377701--377740	12	3.2	12	86	6	62	15	55	12	17	1.70
377700--377740	13	3.2	13	86	6	66	14	56	12	17	1.68
381002--381033	15	2.1	16	94	5	57	6	25	18	50	1.70
381784--381817	16	2.1	16	94	0	59	32	26	8	32	1.87
382213--382272	13	4.6	13	93	6	104	16	53	16	13	1.73
384370--384416	23	2.0	23	95	0	85	51	12	14	21	1.76
391720--391772	21	2.5	21	84	0	70	20	26	18	33	1.96
391762--391834	20	3.7	20	83	7	103	36	20	19	23	1.95
392422--392469	20	2.4	20	82	0	60	37	25	16	20	1.93
392512--392561	20	2.5	20	80	0	55	22	18	24	36	1.95
392544--392583	20	2.0	20	100	0	80	10	15	20	55	1.68
392548--392591	20	2.2	20	87	0	61	13	13	20	52	1.74
394455--394585	20	6.8	20	85	10	193	38	20	20	19	1.93
394455--394602	40	3.9	40	86	7	193	38	20	20	20	1.94
394698--394764	20	3.3	20	89	0	98	23	19	19	37	1.94
395248--395352	21	5.0	21	71	3	86	20	36	20	22	1.95
395245--395355	42	2.6	42	77	5	109	20	36	19	22	1.95
396707--396745	14	2.8	14	84	0	51	35	0	17	46	1.49
396867--396942	33	2.3	34	88	2	109	44	19	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396867--396920	14	3.5	14	75	22	54	44	20	24	11	1.83
396959--397052	33	2.8	34	86	3	127	12	24	20	42	1.87
397024--397112	20	4.4	20	88	2	135	17	22	24	34	1.96
400436--400495	20	3.0	20	90	4	86	23	18	20	38	1.93
401188--401247	21	2.8	22	77	10	70	53	3	0	43	1.17
401182--401248	20	3.3	18	72	22	53	55	4	0	40	1.20
402189--402213	11	2.3	11	100	0	50	28	0	8	64	1.22
405492--405544	19	2.6	19	82	11	61	39	0	0	60	0.97
408695--408745	25	2.0	25	100	0	102	45	3	19	31	1.69
420023--420099	37	2.1	37	100	0	154	24	10	25	38	1.87
420647--420682	15	2.4	15	90	0	54	38	0	2	58	1.13
426640--426670	16	1.9	16	93	0	53	54	19	12	12	1.70
426734--426800	16	4.3	16	92	3	111	59	17	10	11	1.60
427870--427920	10	4.7	10	80	17	57	56	25	9	7	1.58
427870--427921	24	2.2	24	96	0	95	55	25	11	7	1.61
448565--448589	13	1.9	13	100	0	50	60	0	40	0	0.97
451163--451214	25	2.1	25	100	0	104	26	11	34	26	1.91
451227--451272	23	2.0	23	91	0	74	47	4	34	13	1.62
451227--451287	23	2.6	23	81	5	59	50	6	32	9	1.61
451277--451329	21	2.5	21	93	0	88	62	0	33	3	1.13
451275--451306	17	1.9	16	93	6	55	62	0	34	3	1.11
451536--451626	45	2.0	48	86	6	134	40	0	12	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451802--451841	15	2.7	16	81	14	50	37	0	7	55	1.29
453990--454022	17	1.9	17	93	0	57	45	12	6	36	1.66
454007--454075	22	3.0	22	73	19	77	47	7	4	40	1.51
454232--454271	14	2.9	14	88	3	55	47	5	2	45	1.38
454217--454311	38	2.5	37	84	5	127	47	4	3	45	1.38
454214--454694	12	38.5	13	69	15	101	44	9	2	43	1.49
454230--454694	26	18.6	26	75	11	355	44	9	2	43	1.49
454230--454746	124	4.2	124	96	1	923	44	9	1	43	1.48
454354--454697	150	2.3	145	83	10	403	43	10	2	44	1.51
454829--455087	20	12.6	20	74	8	117	38	18	22	19	1.93
454931--455085	40	3.8	40	81	5	184	37	16	24	21	1.94
454955--455074	63	1.9	63	87	0	177	35	17	25	21	1.95
454914--455087	83	2.1	83	90	0	267	36	17	24	21	1.95
455190--455262	6	12.5	6	97	1	114	31	49	16	2	1.60
455953--455996	6	7.5	6	97	2	81	0	15	52	31	1.44
456074--456117	20	2.2	20	91	0	70	11	18	15	54	1.70
456104--456402	20	14.6	20	76	7	152	19	22	18	39	1.92
456106--456317	40	5.2	40	82	5	217	21	24	16	37	1.93
456106--456317	83	2.6	83	85	2	268	21	24	16	37	1.93
456489--456594	26	4.1	26	93	2	178	42	9	3	44	1.54
458141--458201	26	2.4	24	76	15	59	42	1	6	49	1.38
458569--458595	14	1.9	14	100	0	54	74	14	3	7	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458566--458598	17	1.9	17	88	11	50	72	15	3	9	1.21
458996--459044	21	2.3	21	82	3	62	51	18	0	30	1.47
459476--459543	35	1.9	35	100	0	136	26	14	29	29	1.95
459583--459607	12	2.1	12	100	0	50	24	60	0	16	1.36
459805--459869	31	2.1	31	100	0	130	35	32	29	3	1.73
463394--463484	47	1.9	47	93	4	157	38	19	15	26	1.92
479485--479521	19	1.9	19	88	0	56	35	29	13	21	1.92
479628--479698	20	3.5	20	72	11	72	30	28	18	22	1.97
480514--480579	24	2.8	24	100	0	132	21	22	19	36	1.95
482572--482638	20	3.4	20	77	2	64	50	22	11	14	1.76
482929--482986	22	2.6	22	91	0	98	17	18	44	18	1.87
483264--483300	19	1.9	19	88	0	56	24	16	27	32	1.96
494653--494697	24	1.9	23	86	4	63	53	0	2	44	1.13
515206--515265	10	6.3	9	81	9	66	15	30	28	26	1.96
515206--515265	19	3.2	19	76	19	63	15	30	28	26	1.96
515195--515259	29	2.2	29	91	8	105	15	27	27	29	1.96
515265--515326	22	2.9	21	90	4	88	22	45	20	11	1.83
523769--523807	17	2.3	18	91	8	64	41	0	0	58	0.98
524385--524413	3	9.7	3	100	0	58	0	34	0	65	0.93
526921--526947	14	1.9	14	100	0	54	29	0	0	70	0.88
533665--533769	50	2.1	50	100	0	210	19	31	13	36	1.90
536807--536860	19	2.8	20	80	5	65	37	0	7	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540415--540439	9	2.8	9	100	0	50	16	0	0	84	0.63
555843--555872	2	15.0	2	100	0	60	50	0	0	50	1.00
555929--555982	24	2.3	23	78	15	56	55	3	5	35	1.41
556094--556131	17	2.2	17	86	9	51	34	2	7	55	1.43
557736--557785	25	2.0	25	100	0	100	28	20	12	40	1.87
558353--558496	72	2.0	75	93	4	249	52	6	2	38	1.41
559099--559150	21	2.5	21	87	0	77	21	5	5	67	1.33
561283--561375	21	4.5	21	78	4	100	39	18	24	17	1.91
561283--561375	41	2.3	41	100	0	186	39	18	24	17	1.91
561302--561436	41	3.3	41	84	4	148	37	21	20	20	1.94

Tables:   1   2   3   4   5   6   7   8   9