genome.fa.s9070.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009070.1 Hibiscus syriacus cultivar Beakdansim tig00112498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2268343

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1013 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2129462--2129939	255	1.9	254	82	6	610	28	16	13	41	1.86
2129997--2130199	43	4.7	44	71	10	168	25	30	18	26	1.98
2129987--2130325	129	2.6	131	83	6	411	26	30	16	25	1.97
2130091--2130342	133	1.9	133	81	2	283	26	31	17	25	1.97
2130498--2130573	3	25.0	3	86	2	98	30	0	3	65	1.10
2133890--2133960	34	2.1	34	100	0	142	50	11	11	26	1.72
2138072--2138111	21	1.9	21	85	10	55	47	0	0	52	1.00
2138931--2139006	32	2.5	31	91	4	118	46	31	15	6	1.72
2140244--2140287	17	2.6	17	100	0	88	43	15	11	29	1.82
2141603--2141643	21	1.9	22	85	5	57	34	2	0	63	1.08
2175639--2175711	34	2.1	34	89	0	110	38	6	5	49	1.53
2177884--2177956	17	4.2	16	75	10	56	56	1	0	42	1.08
2178030--2178070	16	2.4	17	80	19	50	58	4	7	29	1.46
2178042--2178071	15	1.9	16	93	6	53	66	6	3	23	1.30
2178079--2178126	15	3.2	15	74	11	53	54	0	0	45	0.99
2178077--2178134	27	2.1	28	78	15	68	48	0	0	51	1.00
2178376--2178635	131	2.0	131	91	0	421	30	31	18	19	1.96
2182401--2182457	26	2.1	27	90	3	89	38	0	12	49	1.41
2183022--2183071	24	2.1	24	100	0	100	32	8	34	26	1.85
2186323--2186364	19	2.2	19	100	0	84	42	23	9	23	1.83
2196598--2196632	18	1.9	18	88	0	52	57	2	8	31	1.44
2197385--2197410	11	2.4	11	100	0	52	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2197394--2197459	19	3.3	19	69	22	55	57	9	0	33	1.30
2202487--2202681	96	2.0	96	85	5	261	40	26	13	19	1.88
2209494--2209601	38	2.9	37	72	21	93	36	20	14	28	1.92
2210843--2210903	31	2.0	31	84	12	81	63	0	6	29	1.19
2211880--2211948	34	2.0	34	85	0	93	37	15	5	40	1.72
2216518--2216939	226	1.9	228	91	2	699	30	13	14	40	1.85
2217292--2217343	18	2.9	17	86	8	68	28	28	7	34	1.85
2223724--2223798	37	2.1	36	82	7	89	62	8	9	20	1.50
2228199--2228233	17	2.1	17	100	0	70	34	20	5	40	1.76
2228467--2228515	15	3.2	16	75	11	50	67	0	0	32	0.91
2228467--2228520	20	2.7	19	80	11	63	66	1	0	31	1.02
2229763--2229787	6	4.2	6	100	0	50	0	68	0	32	0.90
2230427--2230469	16	2.6	16	85	7	52	58	4	4	32	1.39
2232520--2232687	25	6.7	25	97	0	300	32	15	18	33	1.92
2232817--2232872	3	19.0	3	85	10	80	66	0	1	32	1.03
2233076--2233417	87	3.9	87	94	0	567	25	19	29	26	1.98
2233136--2233360	41	5.2	41	71	14	184	25	19	29	25	1.98
2234389--2234416	1	28.0	1	100	0	56	0	0	0	100	0.00
2245343--2245385	16	2.6	16	85	7	52	58	4	4	32	1.39
2247440--2247582	25	5.7	25	98	0	259	32	15	18	33	1.92
2247712--2247772	3	21.0	3	83	12	83	67	0	1	31	1.01
2249302--2249334	14	2.3	15	89	5	50	60	9	0	30	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253275--2253313	15	2.7	15	88	7	55	33	17	7	41	1.79
2261589--2261636	23	2.1	23	88	0	69	39	12	14	33	1.84
2261840--2261905	29	2.2	29	82	12	73	43	0	4	51	1.22
2262061--2262123	23	2.7	23	92	0	99	38	20	4	36	1.74
2262543--2262608	34	1.9	34	96	0	123	16	16	18	48	1.82
2262881--2262917	18	2.1	18	89	0	56	51	10	5	32	1.60
2263354--2263412	23	2.6	23	88	0	82	40	16	5	37	1.71
2263428--2263476	21	2.3	22	82	10	66	36	10	12	40	1.77
2266273--2266936	181	3.7	182	92	3	1083	34	17	14	33	1.90

Tables:   1   2   3   4   5   6   7   8   9

The End!