genome.fa.s9070.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009070.1 Hibiscus syriacus cultivar Beakdansim tig00112498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2268343

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1013 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561364--561477	20	5.7	20	84	6	113	31	26	17	24	1.97
561363--561497	40	3.3	41	79	7	150	32	25	17	25	1.96
561665--561708	22	2.0	22	95	0	79	20	45	15	18	1.85
561972--562009	20	1.9	20	88	0	58	13	15	21	50	1.78
563742--563787	18	2.6	18	86	10	60	2	2	21	73	1.04
563841--563906	19	3.4	19	81	4	78	37	24	22	15	1.92
563895--563950	14	3.9	14	70	25	53	48	26	16	8	1.75
563879--563967	32	2.8	31	88	6	135	47	23	17	11	1.80
563984--564023	14	2.9	14	100	0	80	7	15	27	50	1.70
564014--564061	19	2.5	19	82	0	69	14	18	20	45	1.85
566030--566278	19	13.6	19	91	7	410	46	17	21	14	1.83
566278--566335	20	2.9	20	94	0	98	17	22	22	37	1.93
567012--567053	19	2.2	19	100	0	84	42	11	14	30	1.81
567414--567467	24	2.2	24	90	0	81	24	16	20	38	1.92
569944--570074	19	7.7	19	62	23	76	42	20	19	16	1.89
569945--570077	33	4.0	33	93	1	205	41	20	19	18	1.91
570234--570270	14	2.6	14	91	0	65	45	24	0	29	1.53
571628--571694	21	3.2	21	68	4	55	19	20	35	23	1.95
571667--571748	42	2.0	42	85	0	110	23	17	36	23	1.94
573771--573869	33	3.0	33	89	1	144	39	26	23	11	1.88
573746--573911	20	9.1	19	74	16	136	42	22	22	12	1.86
573907--573986	18	4.5	18	76	17	78	11	17	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574498--574549	20	2.6	20	93	0	86	25	19	28	26	1.98
574498--574583	20	4.2	20	77	2	82	24	17	24	33	1.96
574517--574594	41	1.9	41	86	0	111	24	15	20	39	1.91
574563--574653	41	2.2	41	82	3	112	23	23	16	37	1.94
574580--574693	21	5.5	21	80	3	124	19	25	15	39	1.91
574579--574708	62	2.1	62	86	0	188	22	23	16	36	1.94
574921--574988	33	2.2	32	81	7	77	42	0	1	55	1.08
579488--579529	21	2.0	21	85	0	57	50	0	0	50	1.00
585222--585263	14	2.9	14	82	13	50	73	2	0	23	0.94
585228--585349	18	6.8	18	73	18	69	70	2	3	23	1.14
585246--585349	36	2.9	35	76	17	99	70	1	3	24	1.14
585353--585603	95	2.6	95	87	3	351	32	16	17	33	1.92
588971--589062	44	2.1	45	93	2	159	30	28	0	41	1.56
592780--592877	44	2.1	47	90	7	157	28	10	21	39	1.86
600031--600060	15	2.0	15	100	0	60	20	6	33	40	1.78
602541--602725	7	26.6	7	75	18	97	76	0	14	9	1.02
602549--602709	9	18.4	9	73	19	64	76	0	13	9	1.02
602653--602715	30	2.2	29	88	5	92	82	0	6	11	0.83
603997--604068	37	2.0	36	94	2	126	36	20	22	20	1.96
604083--604491	162	2.6	161	84	6	557	30	14	23	30	1.95
604083--604491	51	7.6	54	78	11	373	30	14	23	30	1.95
608738--608819	23	3.7	23	90	6	125	19	25	34	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615181--615216	18	2.0	18	94	0	63	80	0	11	8	0.90
615211--615273	18	3.3	18	80	14	74	73	0	1	25	0.93
615190--615276	37	2.3	39	84	7	117	73	0	3	22	0.98
615200--615286	37	2.5	34	75	15	81	71	0	4	24	1.05
616570--616607	16	2.4	16	90	0	58	50	2	0	47	1.15
616610--616643	14	2.4	14	85	0	50	50	2	0	47	1.16
616622--616962	71	4.4	73	77	17	300	48	4	3	43	1.40
616623--617046	41	10.9	39	70	19	214	46	5	3	44	1.43
616560--617032	37	12.4	37	71	18	260	47	5	2	44	1.41
616639--616891	81	3.0	84	83	11	290	48	4	3	43	1.38
616801--616962	36	4.4	37	77	12	172	48	4	3	43	1.40
616803--617027	36	6.1	36	74	15	158	45	6	3	44	1.47
616623--617059	239	1.9	235	81	10	543	47	5	3	43	1.42
636490--636523	18	1.9	18	88	5	52	17	26	29	26	1.98
646282--646335	2	27.5	2	96	3	101	51	0	0	48	1.00
647916--647948	2	16.5	2	100	0	66	51	0	0	48	1.00
654982--655015	18	1.9	17	88	5	50	64	5	0	29	1.17
657676--657721	12	3.7	12	83	11	56	36	4	6	52	1.47
661509--661646	69	2.0	68	83	2	170	29	13	5	51	1.63
671733--671796	23	2.8	23	81	9	60	40	7	0	51	1.31
672153--672315	87	1.9	87	88	2	247	31	9	17	42	1.80
673515--673550	16	2.2	16	95	0	63	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674218--674282	24	2.7	24	76	11	69	32	3	3	61	1.27
675085--675148	29	2.2	29	94	0	110	51	20	9	18	1.73
677801--677876	26	3.0	26	96	1	136	32	13	3	50	1.60
682845--682894	24	2.1	24	85	7	66	26	2	12	60	1.43
683779--683811	16	2.0	17	88	5	50	12	6	9	72	1.26
688363--688411	20	2.5	20	80	3	55	16	18	0	65	1.28
691705--691754	24	2.1	24	85	7	66	26	2	12	60	1.43
692182--692215	17	2.1	16	88	5	50	14	8	0	76	1.01
692301--692325	8	3.1	8	100	0	50	40	48	0	12	1.40
709129--709174	20	2.3	20	84	0	56	26	21	19	32	1.97
717533--717711	88	2.0	88	92	0	295	38	13	28	19	1.90
718708--718893	62	3.0	61	92	1	300	37	11	28	22	1.89
725284--725322	20	1.9	21	89	5	62	20	38	25	15	1.92
734061--734187	63	2.0	62	87	1	182	37	12	18	32	1.88
743541--743654	34	3.4	34	85	3	149	44	18	7	29	1.76
743722--743817	48	2.0	48	95	0	174	28	22	20	28	1.99
763568--763597	13	2.2	14	94	5	53	23	3	0	73	0.98
767803--767901	51	2.0	48	86	7	137	33	12	12	42	1.79
768504--768559	28	2.0	28	100	0	112	39	17	0	42	1.50
771694--771761	31	2.2	31	84	5	84	60	4	1	33	1.26
773327--773365	20	2.0	20	100	0	78	46	2	15	35	1.60
773919--773952	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775539--775589	17	2.8	17	88	8	66	41	0	0	58	0.98
775887--775918	2	16.0	2	100	0	64	0	50	0	50	1.00
779238--779315	41	1.9	41	89	5	122	19	33	26	20	1.96
783982--784190	103	2.0	103	95	0	373	26	14	22	35	1.93
784207--784274	23	3.0	23	86	0	82	22	27	23	26	1.99
784604--784656	16	3.2	16	72	5	52	30	1	26	41	1.66
789205--789414	104	2.0	103	92	0	348	27	14	22	35	1.93
789431--789498	23	3.0	23	86	0	82	22	27	23	26	1.99
789829--789881	16	3.2	16	72	5	52	30	1	26	41	1.66
790371--790433	16	3.9	17	72	15	53	53	23	1	20	1.54
792316--792391	23	3.5	22	87	5	100	19	28	27	23	1.98
800493--800517	10	2.5	10	100	0	50	32	0	36	32	1.58
813822--813959	35	3.9	35	85	4	190	18	23	19	37	1.94
813822--813964	71	2.0	70	94	1	250	18	23	18	39	1.92
813952--814009	21	2.6	23	78	13	66	8	27	1	62	1.35
813960--814021	21	3.0	20	88	4	79	11	29	0	59	1.32
820931--820972	18	2.3	18	84	8	50	26	2	19	52	1.58
820937--820972	18	1.9	18	88	5	54	27	2	16	52	1.57
821032--821074	5	8.4	5	80	14	52	25	0	2	72	0.97
821530--821611	40	2.0	40	100	0	164	54	7	9	28	1.59
828558--828587	12	2.5	12	94	0	51	33	10	36	20	1.86
829535--829589	26	2.1	26	82	3	65	29	9	12	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833044--833090	18	2.6	18	79	0	58	21	48	17	12	1.79
833067--833109	13	3.3	13	93	0	68	20	44	18	16	1.87
835573--835659	24	3.7	23	84	3	111	19	13	17	49	1.79
835573--835664	12	7.8	12	71	20	59	18	14	17	50	1.79
835576--835666	47	1.9	48	88	6	141	18	14	16	50	1.78
838562--838876	31	10.2	31	94	1	551	33	15	11	39	1.83
838788--838872	16	5.4	16	63	20	54	31	15	12	40	1.85
839386--839562	64	2.8	64	81	5	196	26	20	22	31	1.98
839449--839610	64	2.5	63	85	5	193	26	22	19	30	1.98
842354--842426	23	3.3	23	76	3	78	30	21	23	24	1.99

Tables:   1   2   3   4   5   6   7   8   9