genome.fa.s9070.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009070.1 Hibiscus syriacus cultivar Beakdansim tig00112498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2268343

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1013 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822186--1822696	183	2.8	183	96	0	932	35	14	15	33	1.89
1821669--1822696	517	2.0	517	97	0	1921	35	14	16	33	1.89
1825146--1825210	25	2.6	25	97	0	121	40	10	12	36	1.78
1825556--1825628	23	3.2	23	88	0	110	34	5	20	39	1.76
1826046--1826118	23	3.2	23	88	0	110	34	5	20	39	1.76
1825210--1826519	490	2.7	489	98	0	2534	40	7	10	40	1.69
1827196--1827223	2	14.0	2	100	0	56	50	0	0	50	1.00
1832821--1832871	21	2.4	21	80	6	68	21	25	15	37	1.93
1832900--1833037	41	3.4	41	78	2	152	35	25	15	23	1.94
1832903--1833017	20	5.7	20	78	6	97	33	26	16	23	1.96
1833204--1833247	22	2.0	22	95	0	79	20	45	15	18	1.85
1833705--1833759	25	2.2	24	78	15	58	20	9	18	52	1.71
1834888--1834935	18	2.7	18	93	0	87	27	45	12	14	1.81
1835476--1835521	20	2.3	20	88	0	65	36	26	21	15	1.93
1835515--1835597	19	4.6	19	75	14	86	46	19	18	15	1.83
1835587--1835669	19	4.6	19	72	17	79	13	19	21	45	1.84
1835653--1835728	20	3.8	20	85	1	100	15	25	23	35	1.94
1835674--1835754	20	4.1	19	82	6	72	22	18	24	34	1.96
1836103--1836172	21	3.3	20	72	7	59	24	41	15	18	1.89
1836103--1836184	42	2.0	42	87	0	119	23	41	15	19	1.90
1837057--1837104	20	2.3	21	85	3	62	25	22	10	41	1.85
1837305--1837338	12	2.9	12	86	4	52	17	41	5	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1838122--1838158	12	3.1	12	96	0	65	75	0	24	0	0.80
1838126--1838158	6	5.5	6	92	0	57	78	0	21	0	0.75
1840450--1840580	19	7.7	19	64	23	85	42	19	22	16	1.89
1840451--1840583	66	2.0	66	94	0	230	41	18	21	18	1.90
1840450--1840576	33	3.8	33	87	4	193	42	18	22	16	1.89
1840576--1840652	19	4.3	19	79	18	94	11	16	25	45	1.82
1840591--1840717	33	3.8	33	92	2	202	11	21	22	45	1.82
1840586--1840717	19	7.7	19	69	23	98	10	21	21	46	1.81
1840643--1840699	14	3.7	14	70	20	51	10	24	21	43	1.83
1840824--1840860	14	2.6	14	91	0	65	45	24	0	29	1.53
1842548--1842732	91	2.0	91	90	6	293	47	18	11	22	1.81
1844467--1844523	14	3.7	14	72	20	51	36	24	24	14	1.92
1844444--1844606	33	4.9	33	93	0	254	42	22	23	11	1.86
1844419--1844611	19	11.1	19	68	22	102	43	20	23	12	1.86
1844533--1844589	14	3.7	14	70	20	51	45	22	22	8	1.80
1845628--1845722	20	4.7	20	77	10	86	21	16	27	34	1.95
1845655--1845743	41	2.2	41	82	8	101	20	19	24	35	1.95
1845716--1845783	21	3.3	21	91	2	102	22	22	16	39	1.92
1845773--1845825	21	2.5	22	74	17	58	33	18	24	22	1.97
1852983--1853021	16	2.4	16	86	0	60	28	15	28	28	1.96
1853926--1854002	20	3.8	20	92	0	109	25	27	20	25	1.99
1853966--1854011	20	2.3	20	84	0	56	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853923--1854011	40	2.2	40	77	0	106	31	25	19	23	1.98
1854225--1854300	20	3.8	20	96	0	134	39	23	22	14	1.91
1854206--1854312	40	3.0	34	77	15	106	39	22	24	14	1.91
1854306--1854376	33	2.2	33	81	0	79	19	19	21	39	1.93
1855774--1855816	20	2.2	20	91	0	68	51	20	18	9	1.74
1856327--1856379	20	2.7	20	90	0	88	22	18	28	30	1.98
1863850--1863874	2	12.5	2	100	0	50	48	0	0	52	1.00
1881725--1881767	23	1.9	22	90	0	59	55	13	16	13	1.69
1891856--1891900	2	22.5	2	86	8	65	46	2	2	48	1.26
1892406--1892513	41	2.6	42	79	13	109	26	26	16	29	1.97
1892446--1892595	20	7.4	20	80	7	160	24	26	20	30	1.98
1893126--1893225	40	2.8	34	73	16	101	38	23	24	15	1.92
1893145--1893220	20	3.8	20	92	0	125	39	22	22	15	1.92
1893239--1893303	19	3.7	19	84	13	86	15	20	18	46	1.84
1894893--1894984	42	2.2	42	88	1	141	20	15	42	21	1.89
1894920--1894980	21	2.9	21	73	9	70	21	13	42	22	1.87
1895322--1895374	20	2.7	20	87	0	70	33	28	13	24	1.93
1895328--1895414	20	4.4	20	80	1	86	39	25	18	17	1.92
1895387--1895452	19	3.7	19	76	19	88	46	19	19	13	1.83
1895387--1895462	19	4.3	19	76	19	83	46	22	18	13	1.83
1895459--1895528	20	3.6	19	80	5	77	14	22	24	38	1.91
1896069--1896116	18	2.7	18	93	0	87	14	12	45	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897437--1897479	20	2.2	20	91	0	68	51	20	18	9	1.74
1897758--1897801	22	2.0	22	90	0	70	20	15	43	20	1.88
1897968--1898104	20	6.7	21	73	12	115	20	17	24	37	1.94
1897968--1898123	82	1.9	82	85	2	215	21	18	23	36	1.95
1897968--1898106	41	3.4	41	94	0	233	20	17	24	38	1.93
1898092--1898143	20	2.5	21	87	3	70	21	23	17	38	1.93
1898133--1898185	21	2.5	22	81	6	74	33	18	26	20	1.96
1900624--1900697	18	4.1	18	75	7	60	52	1	1	44	1.17
1902488--1902573	2	44.0	2	73	21	67	48	2	3	45	1.32
1903572--1903611	21	2.0	19	85	9	53	30	2	0	67	1.04
1907932--1907978	24	1.9	25	86	4	69	51	0	10	38	1.37
1923599--1923636	15	2.5	15	100	0	76	28	18	23	28	1.98
1940886--1941050	84	2.0	84	97	0	312	52	15	9	22	1.71
1941501--1941529	12	2.3	13	94	5	51	0	44	13	41	1.44
1945094--1945135	17	2.3	19	84	8	61	59	7	0	33	1.25
1946830--1946936	23	4.7	23	96	0	196	28	27	27	17	1.98
1953591--1953651	23	2.7	23	84	0	86	31	27	22	18	1.97
1954292--1954450	63	2.5	63	80	1	165	25	18	21	34	1.96
1959806--1959856	20	2.5	19	81	12	57	37	1	3	56	1.29
1961352--1961917	112	5.1	112	91	3	925	44	13	15	25	1.84
1961788--1962180	173	2.2	175	85	6	542	41	12	17	28	1.85
1965654--1965707	15	3.6	15	76	0	63	20	46	12	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1968377--1968406	9	3.3	9	95	0	51	10	0	3	86	0.67
1972456--1972544	45	2.0	42	85	6	115	35	17	11	34	1.86
1994247--1994280	9	3.9	9	84	7	52	61	2	0	35	1.11
1994243--1994281	17	2.4	17	95	4	71	61	5	0	33	1.18
1998756--1998887	69	2.0	63	89	8	201	19	21	24	34	1.97
2007752--2007793	2	21.0	2	100	0	84	50	0	0	50	1.00
2009177--2009202	6	4.3	6	100	0	52	15	15	53	15	1.73
2012351--2012388	4	9.5	4	88	0	58	26	5	23	44	1.74
2013217--2013271	25	2.2	26	83	6	69	38	3	0	58	1.16
2014108--2014140	16	2.1	16	100	0	66	27	6	6	60	1.44
2021039--2021095	28	2.0	28	100	0	114	49	21	19	10	1.78
2026305--2026447	72	2.0	72	94	0	250	28	31	9	30	1.88
2027662--2027704	21	2.0	21	100	0	86	23	46	4	25	1.71
2031259--2031319	31	2.1	30	81	9	72	31	13	22	32	1.92
2067687--2067794	56	1.9	55	86	1	153	25	9	14	50	1.72
2072538--2072671	45	3.0	45	96	2	243	35	22	4	38	1.74
2079222--2079284	26	2.4	25	82	12	74	46	1	4	47	1.33
2082348--2082483	21	6.5	21	83	6	161	28	22	22	25	1.99
2082473--2082560	21	4.2	21	83	1	97	28	23	20	27	1.99
2083276--2083349	21	3.6	20	75	15	62	28	24	18	28	1.98
2083275--2083328	20	2.7	19	83	11	63	24	24	18	33	1.97
2085904--2085933	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2087812--2087930	4	29.8	4	100	0	238	49	25	0	25	1.50
2102020--2102124	48	2.1	50	89	7	160	38	18	12	31	1.87
2103278--2103364	43	2.0	43	93	0	147	40	14	12	32	1.84
2120457--2120481	12	2.1	12	100	0	50	24	36	24	16	1.94
2126826--2126864	20	2.0	20	89	0	60	30	15	15	38	1.88
2128675--2128705	16	1.9	16	93	0	53	51	19	0	29	1.47
2129264--2129355	36	2.6	36	89	0	139	32	16	11	39	1.85
2129393--2129451	31	1.9	31	86	3	84	30	13	16	38	1.88
2129778--2129874	36	2.7	35	82	7	108	31	17	11	39	1.85
2129799--2129874	35	2.1	36	85	2	100	36	18	10	34	1.85

Tables:   1   2   3   4   5   6   7   8   9