genome.fa.s9141.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009141.1 Hibiscus syriacus cultivar Beakdansim tig00112649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  919200

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220317--220508	92	2.1	93	91	1	307	21	15	29	34	1.94
222650--222686	2	18.5	2	100	0	74	48	0	0	51	1.00
229110--229155	15	3.1	15	93	0	83	43	19	8	28	1.80
229140--229271	57	2.3	57	80	5	151	36	15	5	42	1.70
234111--234168	24	2.5	24	85	2	73	41	20	17	20	1.90
235335--235523	94	2.0	94	100	0	378	46	14	16	22	1.84
240410--240453	3	14.7	3	81	9	54	31	2	4	61	1.28
252286--252943	329	2.0	328	95	0	1174	31	22	18	27	1.97
253544--253619	25	2.9	26	83	11	77	80	1	14	3	0.92
253535--253619	17	5.0	17	76	13	86	80	1	14	4	0.94
253535--253619	19	4.6	17	74	12	71	80	1	14	4	0.94
254926--254987	30	2.1	30	93	0	106	25	33	12	27	1.93
254808--255114	160	1.9	163	89	2	476	27	27	16	28	1.97
254956--255338	133	2.9	130	82	9	449	27	26	17	28	1.98
255278--255387	47	2.3	47	92	0	175	26	21	15	36	1.93
255327--255606	134	2.1	134	85	7	385	29	25	16	28	1.97
255146--255518	180	2.1	180	86	3	518	28	24	15	30	1.96
255013--255606	313	1.9	312	84	4	804	28	25	17	28	1.97
259146--259197	19	2.6	19	79	11	52	40	11	15	32	1.83
262232--262299	31	2.3	30	84	5	93	44	8	11	35	1.72
266347--266503	80	2.0	80	98	0	305	29	14	8	47	1.74
269660--270158	54	9.3	54	88	2	675	27	16	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269682--270151	161	2.9	162	90	2	725	27	15	20	36	1.93
269877--269962	27	3.2	27	64	18	70	26	17	19	36	1.94
269660--270152	215	2.3	215	89	2	733	27	16	21	35	1.94
284392--284778	54	7.3	54	82	6	416	25	15	22	36	1.93
284380--284778	108	3.8	108	80	8	462	25	15	23	36	1.93
284483--284770	154	1.9	154	87	2	427	25	15	23	35	1.94
284537--284737	100	2.0	100	86	1	278	25	15	24	34	1.95
286494--286549	26	2.2	26	90	6	87	41	3	12	42	1.60
287873--287951	22	3.6	21	77	13	79	39	6	8	45	1.61
287942--288060	61	1.9	62	86	1	168	48	5	13	32	1.64
288852--288931	20	4.0	20	96	0	151	25	13	20	41	1.88
288968--289008	20	2.0	20	90	0	64	24	12	19	43	1.85
288796--289008	117	1.8	117	92	0	363	26	11	20	41	1.87
288890--289086	77	2.5	77	89	0	304	29	13	17	39	1.88
289044--289126	20	4.1	20	90	3	130	27	15	15	40	1.88
289911--289944	2	17.0	2	100	0	68	50	0	0	50	1.00
290177--290511	133	2.5	133	83	3	388	31	18	19	31	1.95
290309--290584	133	2.1	133	79	6	283	31	18	17	32	1.95
291895--291955	7	9.3	6	81	15	52	3	19	0	77	0.91
291894--291952	13	4.4	14	74	21	54	3	18	0	77	0.90
291895--291930	18	1.9	19	88	5	56	2	19	0	77	0.88
291895--291938	7	6.7	7	87	10	58	2	20	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302825--302871	18	2.6	18	89	0	67	29	36	21	12	1.91
306830--306870	9	4.6	9	84	9	57	2	12	0	85	0.70
311536--311591	28	2.0	28	85	0	76	32	21	14	32	1.93
315615--315687	32	2.4	30	86	6	101	23	20	23	32	1.98
316568--316628	25	2.4	25	94	0	104	44	3	11	40	1.57
320116--320151	18	1.9	19	88	5	56	50	0	8	41	1.33
323913--324001	32	2.9	30	83	6	108	29	20	17	32	1.96
323986--324044	24	2.6	22	83	5	64	28	18	23	28	1.98
323991--324044	22	2.3	23	84	6	65	29	16	25	27	1.97
325891--325922	16	2.0	16	93	0	55	56	0	3	40	1.15
330086--330159	24	3.2	24	80	17	77	9	21	18	50	1.75
330098--330159	24	2.6	24	89	5	90	9	22	19	48	1.78
330098--330167	24	2.9	24	81	8	81	8	21	20	50	1.74
331921--331946	3	8.7	3	100	0	52	69	30	0	0	0.89
339679--339812	67	2.0	67	83	2	171	44	13	24	17	1.84
342474--342518	18	2.5	18	100	0	90	24	6	31	37	1.81
342937--343247	54	5.8	54	87	0	307	34	13	15	37	1.86
342939--343193	108	2.4	108	86	0	339	34	12	14	38	1.83
342944--343247	162	1.9	162	80	0	356	34	12	15	37	1.85
343120--343338	54	4.1	54	89	4	309	34	20	16	28	1.95
344905--345391	29	14.9	29	66	21	175	27	21	19	31	1.97
344865--345027	67	2.4	67	90	2	247	25	23	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344905--345123	96	2.3	96	87	0	303	27	22	19	30	1.98
345001--346583	67	23.9	67	83	2	1861	27	21	18	32	1.96
344865--345190	163	2.0	163	88	1	483	26	22	19	31	1.97
345107--345296	38	5.5	37	70	21	151	26	20	20	32	1.97
345632--346102	38	13.9	37	59	23	97	26	21	18	33	1.96
345812--345927	29	3.7	29	68	18	88	29	22	18	29	1.98
346139--346194	29	1.9	29	85	0	76	28	21	21	28	1.99
346292--346370	29	2.7	30	84	7	101	26	27	17	27	1.98
346316--346448	29	4.5	28	73	19	90	25	24	21	28	1.99
346429--346553	38	3.5	37	70	18	122	25	22	21	30	1.99
346681--346826	40	3.6	40	77	2	132	32	19	22	26	1.97
347212--347245	15	2.2	16	89	5	52	8	0	11	79	0.94
347252--347321	18	3.3	21	75	23	67	50	1	8	40	1.42
347269--347321	23	2.3	23	83	6	72	54	1	5	37	1.35
347307--347339	18	1.9	17	88	11	50	63	0	0	36	0.95
347249--347337	42	2.1	42	87	6	128	51	1	6	40	1.36
350570--350598	14	2.0	15	93	6	51	65	6	6	20	1.40
350921--351341	38	11.3	38	85	6	451	43	2	8	45	1.47
351144--351168	13	1.9	13	100	0	50	40	0	8	52	1.31
359079--359456	38	10.2	36	76	14	206	43	2	8	46	1.46
359080--359219	74	1.9	72	86	5	201	40	2	10	47	1.49
359234--359267	2	17.5	2	93	6	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359282--359337	23	2.4	24	85	8	71	46	0	8	44	1.34
359307--359447	35	3.9	35	88	7	192	46	2	7	43	1.45
359312--359448	37	3.8	36	85	6	145	48	2	6	42	1.44
359479--359526	4	12.8	4	75	20	50	22	2	0	75	0.91
359451--359523	27	2.7	27	81	6	78	27	1	0	71	0.95
359455--359526	36	2.0	37	83	8	94	27	1	0	70	0.95
359451--359526	33	2.4	30	77	16	73	26	1	0	72	0.93
359499--359533	17	2.1	17	94	5	63	20	5	0	74	1.02
359492--359525	15	2.3	15	90	5	52	23	2	0	73	0.97
364136--364177	20	2.0	21	86	4	59	23	2	0	73	0.94
364219--364247	15	1.9	15	100	0	58	34	0	6	58	1.25
364190--364248	22	2.5	24	76	17	61	40	1	5	52	1.33
364241--364272	16	2.0	16	100	0	64	37	0	18	43	1.51
364239--364464	24	9.4	24	71	16	121	43	1	8	46	1.45
364292--364368	7	10.2	8	71	21	60	40	0	7	51	1.31
364213--364356	76	1.9	74	88	5	218	39	0	9	50	1.39
364224--364329	26	4.2	26	66	22	80	38	0	10	50	1.43
364224--364388	15	11.1	14	71	15	55	39	1	10	49	1.45
364234--364388	60	2.6	59	85	8	206	40	1	10	48	1.45
364208--364457	45	5.4	46	72	16	169	42	1	8	48	1.43
364468--364509	20	2.1	20	95	0	75	42	7	4	45	1.52
364495--364554	22	2.7	23	84	10	79	36	8	8	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365153--365181	15	1.9	15	100	0	58	55	10	0	34	1.34
366818--366857	17	2.4	17	86	0	53	52	0	5	42	1.23
367813--367838	9	2.9	9	100	0	52	65	34	0	0	0.93
368818--368882	2	32.5	2	100	0	130	49	0	0	50	1.00
370118--370160	16	2.7	16	100	0	86	37	6	18	37	1.78
373151--373175	5	5.0	5	100	0	50	40	0	0	60	0.97
391558--391799	107	2.2	109	80	5	305	45	21	14	18	1.84
391558--391807	106	2.3	109	80	6	305	45	20	15	18	1.86
392591--392634	20	2.2	20	84	8	54	68	0	4	27	1.09
392758--393191	202	2.1	201	77	9	459	28	19	17	34	1.95

Tables:   1   2   3   4   5   6