Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009141.1 Hibiscus syriacus cultivar Beakdansim tig00112649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  919200

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
874757--875272
165
3.1
165
80
4
574
26
18
22
32
1.97
874675--875158
85
5.9
81
74
7
332
26
19
23
30
1.98
874653--875297
84
7.8
84
77
7
544
25
19
23
31
1.98
879382--879411
10
3.0
10
95
0
51
86
3
0
10
0.67
880496--880558
2
31.5
2
100
0
126
50
0
0
49
1.00
881858--881882
13
1.9
13
100
0
50
72
0
0
28
0.86
882003--882158
35
4.2
38
78
15
125
42
7
4
45
1.53
881946--882193
108
2.3
108
80
12
274
43
7
3
45
1.49
881908--882111
73
2.9
70
79
12
213
46
6
3
43
1.47
881947--882158
32
5.9
36
77
16
140
44
7
4
44
1.50
881947--882158
73
2.9
76
77
16
197
44
7
4
44
1.50
881951--882260
41
8.4
37
71
19
134
44
7
4
43
1.51
882881--882939
28
2.1
29
90
3
93
30
8
1
59
1.37
886886--886914
3
9.7
3
100
0
58
68
0
0
31
0.89
887135--887204
23
3.0
23
91
4
106
32
21
25
20
1.97
890852--890884
17
1.9
17
100
0
66
66
6
6
21
1.35
890852--890891
17
2.2
18
91
8
64
67
5
7
20
1.34
893760--893823
32
2.0
31
90
3
101
51
17
12
18
1.76
896806--896918
55
2.1
55
93
0
190
39
11
10
38
1.76
896837--896915
29
2.9
28
75
21
85
39
12
11
36
1.79
896810--896900
26
3.4
25
71
16
76
38
12
9
39
1.76
903176--903239
26
2.5
26
89
0
92
29
25
10
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
917933--917996
19
3.3
19
78
8
67
32
20
10
35
1.87

Tables:   1   2   3   4   5   6

The End!