genome.fa.s9141.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009141.1 Hibiscus syriacus cultivar Beakdansim tig00112649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  919200

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609177--609303	33	3.8	33	88	4	202	42	19	22	14	1.88
609178--609310	66	2.0	66	97	0	248	41	19	22	16	1.90
609466--609502	14	2.6	14	91	0	65	45	24	0	29	1.53
610855--610977	42	2.9	41	79	7	113	22	18	37	21	1.94
612975--613115	19	7.8	19	72	17	104	43	19	24	12	1.86
613000--613098	33	3.0	33	89	1	153	39	22	26	12	1.89
613121--613182	19	3.2	19	79	4	70	8	16	22	53	1.69
613703--613755	20	2.7	20	90	0	79	28	20	26	24	1.99
613764--613837	20	3.7	20	92	0	112	29	16	21	32	1.95
617177--617210	15	2.3	15	100	0	68	26	17	8	47	1.77
619713--620131	218	1.9	219	88	4	641	30	19	17	31	1.95
619932--621014	174	6.2	175	75	11	971	31	19	17	32	1.94
620226--620411	90	2.1	90	91	1	302	37	20	15	26	1.92
620404--620597	87	2.2	86	90	3	309	25	18	19	36	1.94
619963--620774	261	3.1	260	78	9	975	30	19	17	33	1.94
619932--621014	351	3.1	350	73	13	1115	31	19	17	32	1.94
624005--624121	7	16.9	7	77	19	97	0	18	0	79	0.83
624018--624117	6	16.8	6	77	15	93	1	19	1	79	0.86
624005--624130	12	10.2	12	72	21	84	0	19	0	79	0.83
624007--624131	51	2.4	52	82	13	152	0	19	0	79	0.84
627844--627895	6	8.8	6	83	8	54	67	0	13	19	1.23
627861--627921	20	3.1	19	84	11	70	68	4	8	18	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627876--627934	20	3.0	20	82	5	66	64	8	10	16	1.48
632683--632709	14	1.9	14	100	0	54	59	0	0	40	0.98
636052--636088	2	18.5	2	100	0	74	48	0	0	51	1.00
643079--643148	24	2.8	25	87	8	99	20	24	24	31	1.98
658570--658609	15	2.7	16	85	11	50	35	5	17	42	1.71
658796--658865	18	3.7	18	73	14	68	18	22	32	25	1.97
658809--658886	22	3.7	22	73	13	83	23	19	29	28	1.98
658793--658886	40	2.3	40	100	0	188	21	20	30	27	1.98
669495--669524	14	2.1	14	100	0	60	30	43	0	26	1.55
671616--671665	24	2.1	24	92	0	82	26	20	16	38	1.92
671670--671756	39	2.2	39	85	0	120	26	21	14	36	1.93
682921--682967	19	2.6	18	74	16	51	51	0	0	48	1.00
690678--690731	28	1.9	28	96	0	99	25	25	22	25	2.00
691238--691329	42	2.2	42	84	2	121	42	16	21	19	1.89
691251--691347	42	2.3	41	84	7	115	45	15	20	18	1.85
692952--692980	2	14.5	2	100	0	58	48	0	0	51	1.00
693260--693302	22	1.9	23	85	4	61	39	2	0	58	1.11
693345--693381	11	2.9	13	84	15	51	21	10	2	64	1.37
695469--695628	87	1.8	87	84	0	221	34	26	15	24	1.94
695469--695667	87	2.3	87	79	5	213	31	26	14	27	1.95
701901--701942	9	4.8	9	76	5	50	57	0	0	42	0.99
701963--702013	26	2.0	26	88	7	77	56	0	1	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702351--702389	16	2.4	17	86	8	62	30	12	28	28	1.93
702360--702395	16	2.2	16	95	0	63	25	13	36	25	1.93
706059--706122	26	2.5	26	100	0	128	31	12	6	50	1.65
706435--706913	182	2.6	181	85	3	658	41	13	15	29	1.85
706839--706875	20	1.9	18	89	10	56	51	13	16	18	1.76
709117--709182	21	3.1	21	93	0	105	43	10	30	15	1.80
709215--709280	33	2.0	33	88	5	98	33	0	43	22	1.54
710513--710672	65	2.5	66	85	5	202	30	23	19	27	1.98
710513--710692	65	2.8	64	79	13	190	28	23	19	28	1.98
714489--714518	15	2.0	15	100	0	60	60	6	26	6	1.47
716492--716594	43	2.3	43	83	3	125	24	24	22	29	1.99
718101--718144	21	2.1	21	83	8	54	11	40	13	34	1.81
719155--719334	65	2.8	64	82	7	213	28	23	19	28	1.98
719695--719747	19	2.8	19	94	0	88	32	0	11	56	1.35
719989--721146	200	5.8	200	93	0	1910	37	15	15	31	1.89
719989--721146	399	2.9	400	93	1	1955	37	15	15	31	1.89
719989--721146	599	1.9	599	92	1	1964	37	15	15	31	1.89
722623--722709	3	29.0	3	83	0	102	33	4	32	29	1.78
724160--724269	51	2.1	53	78	9	120	39	16	19	25	1.92
724012--724464	252	1.8	250	88	1	692	37	15	16	30	1.90
724334--724681	177	2.0	177	87	2	511	37	13	17	31	1.88
727337--728067	200	3.6	200	79	8	659	39	13	15	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728146--728190	23	2.0	23	95	0	81	37	20	8	33	1.83
728062--728224	87	1.9	87	97	0	308	32	14	12	40	1.83
728745--728872	43	2.9	43	72	17	109	46	6	3	42	1.47
728773--728916	16	8.4	17	72	18	104	49	3	5	41	1.43
728804--728921	8	15.1	8	71	24	65	50	2	5	41	1.40
728767--728917	2	79.5	2	64	27	55	49	3	5	42	1.42
729284--729377	20	4.7	20	85	0	107	28	24	20	26	1.99
729285--729370	40	2.2	40	91	0	136	26	25	19	27	1.99
729564--729607	22	2.0	22	86	0	61	22	43	13	20	1.87
729861--729934	20	3.8	20	78	1	78	14	18	18	47	1.83
730071--730125	25	2.2	26	78	15	62	20	9	18	52	1.71
731731--731832	19	5.6	19	78	12	106	44	22	20	12	1.85
731844--731935	14	5.9	14	70	22	67	11	17	21	48	1.79
731839--731954	33	3.5	33	96	0	214	12	18	20	49	1.79
731860--731970	19	6.4	19	75	19	125	13	18	19	47	1.82
731924--732029	20	5.4	19	85	3	104	16	20	24	38	1.92
732438--732504	21	3.2	21	66	6	55	23	35	20	19	1.95
732411--732504	42	2.2	42	81	7	102	22	35	21	21	1.96
733848--733884	14	2.6	14	86	0	56	32	0	18	48	1.49
733991--734084	19	5.5	19	67	23	73	42	19	23	14	1.88
733991--734098	33	3.3	33	85	0	144	43	20	22	13	1.87
734087--734132	19	2.4	19	82	7	58	45	23	15	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734532--734580	21	2.3	21	86	6	73	24	24	16	34	1.95
734570--734618	21	2.4	20	86	3	62	38	16	22	22	1.92
734610--734744	20	6.7	20	85	5	137	30	25	19	24	1.98
734607--734719	41	2.8	42	85	4	133	30	26	18	23	1.98
734651--734744	40	2.3	40	88	0	152	26	27	20	25	1.99
737900--737975	20	3.8	20	94	0	125	39	25	21	14	1.91
737881--737987	40	3.0	34	76	17	108	39	24	22	14	1.91
737994--738052	14	3.8	16	72	26	54	13	23	18	44	1.86
739632--739710	42	1.9	42	89	2	124	20	15	43	21	1.88
739650--739710	21	2.9	21	73	9	70	21	13	42	22	1.87
742241--742316	20	3.8	20	94	0	125	39	25	21	14	1.91
742222--742328	40	3.0	34	76	17	108	39	24	22	14	1.91
742340--742393	14	3.5	14	75	22	54	11	22	20	46	1.82
743969--744059	42	2.2	42	88	3	141	20	15	41	21	1.89
743995--744055	21	2.9	21	73	9	70	21	13	42	22	1.87
744405--744491	20	4.4	20	82	1	86	36	25	20	17	1.94
744425--744527	19	5.6	19	76	14	81	40	23	22	13	1.89
744540--744597	14	3.8	14	73	20	53	10	12	24	53	1.68
744523--744616	33	2.8	33	90	0	134	10	13	23	52	1.72
744555--744671	19	6.3	19	76	12	82	14	18	21	45	1.85
744617--744671	20	2.8	19	83	8	65	16	23	23	36	1.94
744659--744697	20	2.0	20	84	0	51	30	12	23	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745233--745278	18	2.6	18	89	3	76	13	13	45	28	1.80
746598--746656	20	3.0	20	87	0	73	44	22	18	15	1.87
746924--746967	22	2.0	22	95	0	79	18	15	45	20	1.85
747154--747248	20	4.7	20	78	7	93	23	18	25	32	1.97
747175--747269	41	2.3	41	83	3	120	22	20	23	34	1.96
747237--747288	20	2.5	21	87	3	70	21	23	17	38	1.93
747278--747330	21	2.5	22	81	6	74	33	18	26	20	1.96
747882--747970	44	2.0	43	82	2	106	40	24	0	34	1.56
752641--752780	48	2.8	50	80	12	153	19	25	25	30	1.98
760835--760894	29	2.1	29	96	0	111	25	28	28	18	1.98

Tables:   1   2   3   4   5   6