genome.fa.s9174.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009174.1 Hibiscus syriacus cultivar Beakdansim tig00112737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1358226

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222745--222796	20	2.6	20	78	6	52	34	9	23	32	1.87
223381--223415	15	2.3	15	90	0	52	31	2	31	34	1.73
223625--223703	24	3.3	24	85	3	97	22	27	20	29	1.98
232837--232861	13	1.9	13	100	0	50	48	28	0	24	1.52
232910--232975	3	22.0	3	100	0	132	33	0	0	66	0.92
237061--237584	200	2.6	195	85	5	658	31	16	13	38	1.88
237422--237756	177	1.9	178	86	4	489	32	13	13	40	1.84
242670--242736	33	2.0	33	97	0	125	25	46	0	28	1.53
242771--242813	21	2.0	21	95	0	77	13	32	11	41	1.81
245243--245291	22	2.2	22	82	7	64	32	30	28	8	1.86
245986--246203	103	2.1	103	97	1	411	25	12	23	37	1.91
246210--246329	47	2.6	47	93	1	206	23	22	23	30	1.99
246210--246334	23	5.3	23	76	2	124	24	21	23	31	1.98
247721--248137	182	2.3	182	91	0	699	27	17	15	40	1.89
248244--248328	28	3.0	28	100	0	170	31	17	7	43	1.76
256540--256646	20	5.3	20	80	6	117	33	27	16	22	1.96
256833--256876	22	2.0	22	90	0	70	20	43	15	20	1.88
257139--257197	20	3.0	20	87	0	73	15	18	22	44	1.87
257334--257388	25	2.2	24	78	15	58	20	9	18	52	1.71
259109--259153	20	2.3	20	85	14	67	40	17	22	20	1.92
259137--259266	19	7.6	19	67	23	101	46	21	19	13	1.83
259153--259244	14	5.9	14	69	22	58	47	22	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259137--259261	33	3.8	33	95	0	223	47	21	18	12	1.82
259273--259352	33	2.4	33	95	0	142	11	18	23	46	1.81
259294--259352	19	3.4	19	73	22	74	13	18	20	47	1.82
259278--259336	14	3.9	14	74	20	55	10	16	25	47	1.78
259339--259411	20	3.7	20	88	0	110	16	24	23	35	1.95
259379--259437	20	3.0	20	84	0	64	25	15	23	35	1.94
259339--259429	40	2.3	40	80	0	101	18	21	23	36	1.95
259775--259866	41	2.2	42	81	9	109	21	38	15	25	1.92
261273--261311	14	2.8	14	84	0	51	35	0	17	46	1.49
261443--261485	19	2.3	19	91	0	68	51	16	16	16	1.77
261526--261581	20	2.8	20	94	0	94	14	21	23	41	1.89
261828--261944	41	2.9	41	85	1	146	23	17	25	32	1.97
261813--261940	20	6.4	20	83	2	141	25	18	27	28	1.98
261930--261981	20	2.5	21	87	3	70	21	23	17	38	1.93
261848--261982	61	2.2	61	77	7	141	23	20	22	34	1.97
262058--262103	19	2.3	20	81	7	58	26	17	28	28	1.98
270415--270506	48	1.9	48	81	0	112	23	10	13	52	1.71
270451--270509	24	2.5	24	82	0	82	22	6	15	55	1.63
271687--272064	189	2.0	188	92	2	625	47	7	3	42	1.47
282223--282256	16	2.1	17	88	5	52	38	5	0	55	1.24
282700--282796	31	3.1	31	82	2	115	38	11	9	41	1.73
284142--284174	16	2.1	16	94	0	57	42	15	27	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286634--286690	21	2.7	21	97	0	105	22	28	24	24	2.00
287094--287121	2	14.0	2	100	0	56	50	0	0	50	1.00
287444--287484	21	2.0	22	85	9	59	39	29	7	24	1.82
292116--292153	20	1.9	20	94	0	67	21	21	31	26	1.98
292842--292898	21	2.7	21	97	0	105	22	28	24	24	2.00
293651--293693	21	2.0	22	86	8	63	37	27	9	25	1.87
294769--294819	22	2.4	21	83	6	66	11	11	7	68	1.39
303403--303440	4	9.5	4	85	8	51	23	0	5	71	1.07
303961--304007	24	2.0	24	95	0	85	34	17	21	27	1.95
303965--304016	24	2.2	24	85	0	68	36	19	19	25	1.95
304128--304161	12	2.8	12	90	0	50	14	0	29	55	1.40
309644--309686	18	2.4	18	100	0	86	27	34	18	18	1.95
311872--311925	20	2.7	21	77	8	58	37	12	20	29	1.90
311961--312072	20	5.5	20	75	17	70	28	14	25	31	1.95
311959--312086	41	3.0	41	79	12	129	28	14	26	31	1.95
311981--312100	21	5.8	22	78	14	98	28	13	26	31	1.94
314444--314548	38	2.8	38	94	2	176	28	31	14	25	1.95
322782--322819	19	2.0	20	89	5	60	73	2	15	7	1.17
323984--324029	20	2.3	20	75	20	51	21	23	19	34	1.96
341218--341293	38	2.0	38	84	7	100	47	2	2	47	1.30
341424--341461	20	1.9	20	88	0	58	21	26	10	42	1.85
342796--343021	43	5.2	43	81	7	210	25	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342796--343029	87	2.7	87	77	12	212	26	20	19	32	1.97
343430--343484	23	2.4	23	80	11	60	1	34	20	43	1.62
343833--343929	42	2.4	40	79	6	113	36	21	13	28	1.91
347717--347754	20	1.9	20	88	0	58	13	26	36	23	1.91
351553--351592	21	1.9	21	85	10	55	35	7	2	55	1.42
354949--355086	41	3.4	41	88	6	190	31	19	17	31	1.95
354950--355109	83	2.0	81	83	7	207	30	18	18	33	1.94
355097--355225	42	3.1	42	75	10	147	24	23	17	35	1.95
355097--355225	41	3.1	41	76	10	145	24	23	17	35	1.95
356869--356930	16	3.9	16	75	8	54	45	22	16	16	1.85
356869--356988	32	3.8	32	87	0	114	45	25	14	15	1.83
356918--356973	16	3.5	16	76	9	69	50	28	12	8	1.70
356865--356988	64	1.9	64	81	3	151	45	25	13	15	1.83
356901--356988	16	5.5	16	73	0	68	46	27	14	11	1.79
357908--357960	22	2.4	22	90	0	79	30	28	11	30	1.91
358522--358564	22	1.9	23	86	13	63	41	4	2	51	1.35
360589--360627	16	2.2	19	86	13	57	71	2	2	23	1.10
360615--360734	33	3.5	34	79	13	113	61	13	2	22	1.43
365664--365700	2	19.0	2	94	5	67	48	0	0	51	1.00
365665--365698	17	2.0	17	100	0	68	47	0	0	52	1.00
367530--367558	2	15.0	2	92	7	51	48	0	0	51	1.00
374883--374943	27	2.3	27	85	0	86	16	13	24	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379611--379715	12	8.8	12	70	4	77	46	21	27	3	1.69
379627--379716	24	3.8	24	88	4	137	48	21	25	4	1.68
379760--379822	12	5.2	12	72	14	58	41	23	33	1	1.64
379744--379830	24	3.6	24	89	3	122	40	20	36	2	1.65
379939--380000	23	2.6	24	79	5	72	48	16	27	8	1.74
381258--381360	30	3.6	29	80	11	106	41	10	8	38	1.71
381282--381370	26	3.2	26	78	10	88	50	6	8	33	1.60
385103--385394	43	6.8	43	89	5	389	32	24	26	17	1.97
385103--385394	86	3.4	86	91	1	435	32	24	26	17	1.97
385103--385394	129	2.3	128	89	1	451	32	24	26	17	1.97
397021--397091	21	3.4	21	75	14	76	38	14	18	29	1.90
400450--400495	21	2.2	21	100	0	92	36	32	8	21	1.84
405269--405297	6	4.8	6	100	0	58	82	0	0	17	0.66
413647--413734	36	2.4	36	88	0	122	27	21	7	43	1.80
415689--415753	13	5.0	13	86	0	85	33	20	21	24	1.97
415689--415753	26	2.5	26	90	5	96	33	20	21	24	1.97
415991--416020	10	3.0	10	90	0	51	66	13	0	20	1.24
424897--424922	12	2.2	12	100	0	52	23	7	23	46	1.78
425248--425290	21	2.0	21	82	8	52	34	11	11	41	1.78
434723--434775	20	2.7	20	79	8	63	24	28	22	24	2.00
437062--437089	2	14.0	2	100	0	56	0	50	0	50	1.00
437089--437124	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438664--438751	23	3.8	23	79	5	97	25	7	37	29	1.84
450205--450253	13	3.8	13	80	0	62	28	16	18	36	1.92
455881--456047	46	3.6	46	87	4	201	26	22	5	44	1.76
459622--459678	21	2.7	21	83	0	69	3	36	10	49	1.55
462342--462491	41	3.6	41	83	3	167	42	6	14	36	1.71
462384--462515	41	3.2	40	80	6	158	36	8	16	38	1.79
463070--463129	2	32.0	2	87	12	92	46	0	0	53	1.00
463611--463644	16	2.1	16	88	0	50	32	8	29	29	1.87
465305--465335	2	15.5	2	100	0	62	48	0	0	51	1.00
465109--465311	109	1.9	109	97	0	388	41	8	12	37	1.73

Tables:   1   2   3   4   5   6   7