genome.fa.s9174.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009174.1 Hibiscus syriacus cultivar Beakdansim tig00112737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1358226

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470062--470090	2	14.5	2	100	0	58	51	0	0	48	1.00
470533--470588	24	2.3	24	90	6	87	26	26	26	19	1.99
471151--471248	48	2.0	48	96	0	178	22	24	20	32	1.98
473315--473368	24	2.2	24	86	3	72	50	18	31	0	1.48
474473--474540	3	23.0	3	75	8	50	35	1	4	58	1.27
474762--474809	3	16.7	3	82	8	64	37	2	0	60	1.09
474759--474807	17	2.9	17	93	0	89	38	2	0	59	1.09
481916--482084	74	2.3	70	77	10	171	45	18	17	17	1.86
481937--482076	73	1.9	71	81	7	165	45	18	19	17	1.86
483928--483982	20	2.7	20	82	2	56	25	25	23	25	2.00
483825--484111	119	2.4	119	90	0	457	31	17	19	32	1.95
484058--484101	20	2.2	20	83	0	52	27	18	27	27	1.98
484259--484362	3	35.7	3	89	5	160	32	0	1	64	1.11
488554--488595	16	2.7	16	85	10	52	38	2	0	59	1.10
490575--490818	67	3.7	67	88	3	350	27	18	13	40	1.88
491099--491298	67	3.0	66	85	2	231	30	18	14	36	1.91
492168--492237	3	23.7	3	91	2	106	31	0	2	65	1.07
494207--494234	2	14.0	2	100	0	56	50	0	0	50	1.00
496030--496085	3	20.0	3	82	14	66	66	1	0	32	1.03
496030--496082	19	2.8	19	85	0	70	66	1	0	32	1.03
496008--496089	22	3.8	21	79	7	83	62	1	0	36	1.03
496030--496085	14	4.0	15	75	15	66	66	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496031--496085	16	3.5	16	76	11	60	67	1	0	30	1.01
496030--496096	22	3.0	21	80	8	80	65	2	0	31	1.07
496450--496547	40	2.5	40	98	1	189	18	19	9	53	1.71
496488--496770	112	2.5	112	91	1	451	26	19	12	41	1.87
497572--497678	53	2.0	54	83	1	135	27	16	14	41	1.88
503773--503837	26	2.5	27	75	9	73	63	6	10	20	1.48
503822--503850	12	2.3	13	94	5	51	51	6	13	27	1.66
505405--505454	20	2.6	19	81	12	57	70	2	2	26	1.09
506537--506586	3	16.7	3	83	8	66	64	0	0	36	0.94
506552--506600	24	2.0	24	88	7	73	69	2	0	28	1.00
506537--506595	21	2.9	21	87	2	75	64	1	0	33	1.04
508437--508462	2	13.0	2	100	0	52	0	50	0	50	1.00
509301--509379	36	2.2	36	86	0	104	39	18	32	8	1.82
509368--509425	24	2.4	24	94	0	98	43	22	29	5	1.75
511870--511912	2	21.5	2	95	0	77	53	0	0	46	1.00
515816--515889	37	2.0	37	100	0	148	32	29	18	18	1.96
518500--518555	2	28.0	2	89	7	87	48	1	1	48	1.22
520477--520527	20	2.5	20	81	6	59	27	27	21	23	1.99
523065--523185	59	2.1	59	95	0	215	33	22	18	25	1.96
523241--523272	10	3.2	10	95	0	55	53	15	9	21	1.70
523417--523523	50	2.3	47	81	13	127	52	12	1	33	1.49
527050--527093	17	2.6	17	100	0	88	6	9	9	75	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531804--531853	18	2.6	19	79	17	59	28	26	18	28	1.98
532936--533078	60	2.4	60	82	11	168	38	4	23	33	1.74
532979--533111	60	2.2	61	81	10	159	40	3	20	35	1.70
535236--535274	6	6.5	6	100	0	78	33	0	51	15	1.44
538952--538985	6	5.7	6	96	0	59	70	0	0	29	0.87
546070--546167	20	4.8	20	85	1	115	46	17	16	19	1.84
546531--546583	21	2.6	21	90	3	90	16	16	16	49	1.81
547606--547639	15	2.1	17	89	10	54	41	8	5	44	1.60
548632--548670	16	2.4	16	86	4	51	33	20	10	35	1.86
548915--548981	15	4.5	15	79	7	82	38	5	13	41	1.69
548930--548996	30	2.3	30	92	2	109	40	5	16	37	1.73
548910--548996	45	2.0	44	90	2	138	42	5	14	36	1.70
549003--549038	14	2.5	14	90	4	54	33	13	19	33	1.91
549331--549393	23	2.7	23	80	5	63	46	1	1	50	1.20
549368--549548	61	2.9	63	75	16	159	49	1	0	49	1.12
549469--549558	17	5.3	16	69	23	60	52	0	1	46	1.07
559909--560377	230	2.0	230	91	0	758	42	15	14	27	1.86
561848--561889	20	2.0	21	90	4	68	35	14	9	40	1.78
582339--582398	30	2.0	30	96	0	111	31	13	11	43	1.80
592268--592308	21	2.0	21	95	0	73	24	24	21	29	1.99
593041--593149	31	3.5	31	73	14	91	34	15	19	30	1.93
596976--597018	22	2.0	22	90	0	68	46	16	16	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597766--597892	31	4.1	31	76	4	121	33	22	16	28	1.95
599072--599096	12	2.1	12	100	0	50	40	16	0	44	1.47
619935--619975	22	2.0	22	90	9	68	34	2	31	31	1.71
625012--625051	5	8.0	5	94	0	71	22	0	17	60	1.37
629025--629287	54	4.9	54	88	0	373	30	17	18	34	1.94
631222--631264	2	21.5	2	100	0	86	51	0	0	48	1.00
633458--633510	20	2.7	20	80	8	63	32	15	30	22	1.94
633943--634203	54	4.8	54	91	0	398	30	16	19	34	1.94
633975--634060	27	3.2	27	65	23	72	27	16	19	36	1.93
640889--640918	2	15.0	2	100	0	60	50	0	0	50	1.00
650625--650656	4	8.0	4	100	0	64	75	0	0	25	0.81
652501--652536	18	1.9	18	88	5	54	55	0	2	41	1.14
655600--655650	3	16.7	3	83	4	66	62	0	1	35	1.06
655851--656348	111	4.5	111	87	4	646	30	17	20	31	1.96
655851--656322	220	2.1	223	86	3	657	30	17	21	31	1.96
656250--656962	66	10.8	66	96	0	1295	31	17	20	29	1.96
658122--658183	27	2.2	28	82	8	72	8	16	0	75	1.02
658162--658197	12	2.8	13	91	8	65	13	22	0	63	1.29
661713--661783	25	2.8	25	78	20	67	67	1	8	22	1.25
661719--661772	4	13.8	4	79	14	51	72	0	5	22	1.05
671490--671540	3	16.7	3	83	4	66	62	0	1	35	1.06
671988--672046	30	1.9	30	86	3	82	33	37	11	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675320--675422	3	33.7	3	84	3	134	61	0	0	37	1.03
675553--676716	227	5.1	228	94	1	2009	35	21	19	22	1.96
675553--676716	303	3.8	304	93	2	1966	35	21	19	22	1.96
675553--676716	76	15.3	76	94	1	2016	35	21	19	22	1.96
677569--677623	22	2.5	22	93	0	101	40	14	10	34	1.81
677974--678313	54	6.1	54	88	8	500	23	21	15	39	1.91
678245--678270	12	2.2	12	100	0	52	38	15	7	38	1.76
679389--679461	35	2.1	34	87	2	101	35	19	10	34	1.87
680316--680537	114	1.9	114	93	0	381	32	19	13	33	1.92
682832--682895	21	3.0	21	86	4	92	26	23	25	25	2.00
684084--684129	21	2.1	21	84	4	56	15	23	28	32	1.95
691929--692022	3	30.7	3	82	4	116	60	1	0	38	1.04
694359--694426	3	21.7	3	78	3	55	42	1	0	55	1.08
695741--695789	22	2.2	22	89	7	73	26	4	2	67	1.19
695720--695789	11	6.3	10	79	17	59	27	4	1	67	1.18
695970--696181	116	1.8	115	86	1	307	39	8	8	43	1.65
696212--696329	3	38.7	3	88	3	173	35	0	0	62	1.07
696447--696510	27	2.4	27	97	0	119	18	43	18	18	1.88
697837--697873	19	1.9	19	88	0	56	32	0	2	64	1.07
700607--700646	21	1.9	21	94	0	71	22	12	10	55	1.67
705343--705539	83	2.4	82	93	0	340	25	13	21	39	1.90
707886--707940	22	2.5	22	96	0	101	34	14	14	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708377--709356	112	8.8	111	85	4	1305	37	13	18	30	1.89
708602--708665	20	3.2	20	63	20	53	42	9	23	25	1.84
708825--708888	20	3.2	20	63	20	53	42	9	23	25	1.84
709049--709112	20	3.2	20	63	20	53	42	9	23	25	1.84
708377--709343	224	4.3	224	92	2	1511	37	13	18	30	1.89
709747--710770	76	13.5	76	97	0	1863	22	21	20	34	1.97
710897--711001	3	34.7	3	86	1	147	36	1	0	60	1.14
711119--711182	27	2.4	27	97	0	119	18	43	18	18	1.88
712510--712546	19	1.9	19	88	0	56	32	0	2	64	1.07
713106--713133	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7