genome.fa.s9174.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009174.1 Hibiscus syriacus cultivar Beakdansim tig00112737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1358226

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206547--1206739	73	2.6	74	88	4	275	33	20	20	24	1.97
1207404--1207479	22	3.5	22	94	1	136	40	14	10	34	1.80
1213045--1213072	6	4.7	6	100	0	56	0	0	32	67	0.91
1214720--1214775	27	2.1	27	89	0	85	60	7	12	19	1.55
1214749--1214776	12	2.3	12	100	0	56	53	7	14	25	1.66
1214835--1214876	7	6.0	7	78	10	50	54	11	16	16	1.70
1217005--1217056	15	3.3	15	73	21	52	53	0	1	44	1.11
1218622--1218682	18	3.4	18	75	22	58	55	0	0	44	0.99
1218622--1218700	19	4.5	18	79	17	78	55	0	0	44	0.99
1226997--1227024	2	14.0	2	100	0	56	50	0	0	50	1.00
1226923--1227104	91	1.9	93	91	7	287	45	14	7	32	1.72
1227754--1227892	42	3.3	42	84	4	165	39	21	17	21	1.92
1227840--1228019	41	4.4	39	81	6	171	32	22	19	25	1.97
1227840--1228017	82	2.2	82	81	4	207	32	22	19	25	1.97
1227879--1228056	82	2.2	82	84	3	225	32	22	18	26	1.97
1227862--1228056	41	4.8	41	82	3	189	29	22	18	29	1.97
1229328--1229376	22	2.2	22	96	0	89	30	16	10	42	1.81
1229779--1229969	83	2.3	83	77	8	201	32	19	14	33	1.92
1232664--1232704	21	2.0	21	90	0	64	48	7	7	36	1.59
1232970--1233163	43	4.5	43	77	10	180	27	16	6	49	1.69
1232971--1233163	88	2.2	85	77	8	210	27	16	6	49	1.70
1233101--1233184	43	2.0	43	80	4	98	27	21	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1237969--1238062	31	3.0	31	87	3	127	38	21	19	21	1.94
1241795--1241867	2	37.0	2	95	2	130	52	0	0	47	1.00
1242667--1242760	31	3.0	31	89	3	136	38	23	18	20	1.93
1245408--1245525	45	2.6	45	91	0	191	23	28	23	23	1.99
1247341--1247401	23	2.7	23	84	0	86	26	24	27	21	1.99
1254294--1254354	23	2.7	23	92	0	104	29	27	24	18	1.98
1255675--1255703	14	2.0	15	93	6	51	68	0	31	0	0.89
1256957--1256986	12	2.5	12	100	0	60	10	13	50	26	1.73
1256984--1257060	32	2.3	33	82	8	86	46	0	0	53	1.00
1265569--1265629	24	2.5	24	83	0	77	52	16	9	21	1.72
1265573--1265654	36	2.3	37	76	6	87	50	17	9	23	1.75
1265804--1265836	16	2.0	17	88	5	50	42	12	9	36	1.74
1272813--1272846	3	11.3	3	100	0	68	0	67	0	32	0.91
1276173--1276237	27	2.4	27	86	0	103	26	41	21	10	1.86
1280829--1280938	32	3.4	32	78	0	103	35	14	22	27	1.93
1283982--1284031	20	2.5	20	84	9	59	52	4	12	32	1.57
1289264--1289312	21	2.3	22	85	3	64	22	14	30	32	1.93
1289338--1289421	3	29.0	3	78	7	93	61	1	1	35	1.11
1290891--1292154	636	2.0	628	97	1	2411	30	22	16	30	1.96
1294559--1294584	2	13.0	2	100	0	52	50	0	0	50	1.00
1294574--1294681	43	2.3	46	86	10	150	52	1	0	44	1.18
1294733--1294759	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1296091--1296648	196	2.8	196	82	5	613	36	5	9	48	1.58
1298482--1298510	2	14.5	2	100	0	58	48	0	0	51	1.00
1298668--1298698	14	2.1	15	94	5	55	12	9	0	77	0.99
1298646--1298763	15	7.9	14	71	16	69	18	5	2	73	1.13
1298668--1298769	14	7.2	14	72	17	54	15	4	3	75	1.12
1298728--1298769	13	3.2	13	83	10	50	16	0	4	78	0.91
1298775--1298839	20	3.4	20	66	10	55	13	16	3	66	1.38
1309531--1309734	110	1.9	110	91	0	336	34	23	19	22	1.96
1311128--1311179	3	17.3	3	100	0	104	32	0	0	67	0.91
1311177--1311203	2	13.5	2	100	0	54	48	0	0	51	1.00
1311222--1311313	40	2.2	40	80	7	103	29	6	1	63	1.27
1311249--1311355	16	6.8	15	70	15	65	34	2	0	61	1.17
1311277--1311350	31	2.4	30	82	12	89	33	2	1	62	1.18
1311358--1311389	15	2.1	15	94	0	55	12	9	0	78	0.97
1311335--1311397	26	2.3	26	80	17	67	20	6	0	73	1.05
1311304--1311450	79	1.9	80	80	12	178	24	5	2	67	1.25
1311402--1311441	18	2.2	18	86	8	55	20	7	5	67	1.34
1311510--1311572	29	2.2	29	82	5	74	17	12	1	68	1.29
1312529--1312569	3	14.3	3	90	10	68	68	0	0	31	0.90
1312529--1312568	11	3.5	11	96	3	71	70	0	0	30	0.88
1312795--1312845	20	2.5	20	87	0	75	33	19	17	29	1.95
1314918--1314955	8	4.8	8	81	12	51	71	0	26	2	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1317010--1317060	19	2.7	19	93	0	84	17	29	25	27	1.98
1318864--1318900	19	1.9	19	89	10	58	32	29	5	32	1.80
1319086--1319220	23	5.9	23	98	0	261	25	26	29	17	1.98
1319797--1319857	2	30.0	2	96	3	113	49	0	1	49	1.10
1321930--1321964	10	3.5	10	92	0	61	11	22	17	48	1.79
1321919--1321964	20	2.3	20	92	0	74	15	23	15	45	1.84
1323423--1323495	36	2.0	37	84	10	96	50	1	4	43	1.29
1324547--1324637	31	2.9	31	78	12	89	45	1	3	50	1.25
1328542--1328580	18	2.2	18	86	9	53	30	7	2	58	1.39
1332019--1332100	38	2.2	38	88	4	130	53	13	4	28	1.60
1335604--1335659	21	2.7	21	77	0	58	25	10	23	41	1.86
1337162--1337195	3	11.3	3	100	0	68	0	0	64	35	0.94
1339788--1339876	18	4.9	18	98	0	169	17	22	32	26	1.97
1346398--1346460	29	2.2	29	85	0	81	25	19	12	42	1.86
1354293--1354358	27	2.4	27	92	0	105	30	15	16	37	1.90
1356875--1356914	22	1.9	22	90	10	66	37	0	7	55	1.29

Tables:   1   2   3   4   5   6   7

The End!