genome.fa.s9259.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009259.1 Hibiscus syriacus cultivar Beakdansim tig00112910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1149570

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209112--209205	42	2.2	42	92	0	152	28	34	12	24	1.92
210037--210105	23	3.0	23	84	0	84	27	24	26	21	1.99
213862--214021	64	2.5	64	81	4	171	31	21	20	26	1.98
214677--214863	31	6.0	31	91	2	297	19	17	22	40	1.91
218449--218625	64	2.8	64	81	5	205	33	20	19	26	1.96
219268--219423	31	5.0	31	93	3	262	20	19	21	38	1.94
221641--221693	22	2.4	22	83	0	70	18	16	41	22	1.90
221847--222003	20	7.8	20	84	1	170	22	14	22	39	1.91
221904--221960	21	2.7	21	100	0	114	26	8	26	38	1.85
222009--222054	20	2.3	20	88	0	65	23	17	21	36	1.94
222785--223053	133	2.0	139	94	4	478	34	17	10	37	1.84
222369--223448	539	2.0	539	86	6	1505	36	16	11	36	1.84
226885--226924	20	2.0	20	85	0	53	50	2	0	47	1.14
228352--228434	30	2.7	30	75	15	89	55	9	13	21	1.66
230211--230569	134	2.7	134	88	0	522	25	17	31	25	1.97
230847--231079	29	7.8	28	68	18	94	43	13	12	30	1.81
230949--231029	29	2.8	29	90	0	135	48	16	6	29	1.70
230791--231004	91	2.3	93	83	4	263	45	15	10	28	1.79
231135--231266	64	2.1	64	88	2	194	42	15	10	31	1.81
231229--231300	37	1.9	37	86	5	101	37	11	9	41	1.74
231418--231533	36	3.3	36	79	2	137	38	12	16	32	1.85
233168--233222	24	2.3	24	79	17	62	1	16	9	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238631--238682	3	17.7	3	80	11	63	65	1	1	30	1.14
238633--238682	14	3.4	14	88	5	64	66	2	2	30	1.14
242953--243081	42	3.1	42	85	1	188	27	3	17	51	1.63
243975--244032	21	2.8	21	81	0	62	17	22	32	27	1.96
245720--245767	15	3.1	16	78	6	53	62	2	4	31	1.26
250555--250604	20	2.5	20	83	3	55	32	28	10	30	1.89
250474--250687	99	2.2	98	85	5	297	35	25	11	27	1.91
255116--255142	2	13.5	2	100	0	54	48	0	0	51	1.00
256888--256963	36	2.1	36	97	0	143	31	10	14	43	1.79
257385--257414	15	2.0	15	100	0	60	13	26	46	13	1.80
261865--261940	36	2.1	36	97	0	143	31	10	14	43	1.79
263206--263232	14	1.9	14	100	0	54	55	0	7	37	1.28
263766--263799	15	2.1	17	89	10	54	61	14	5	17	1.52
265480--265528	21	2.3	21	82	0	62	34	18	24	22	1.96
266207--266303	37	2.6	37	86	0	131	40	16	10	32	1.82
267074--267128	19	2.7	21	75	11	60	32	3	0	63	1.12
267080--267159	19	4.1	19	73	21	58	30	5	0	65	1.14
267009--267157	64	2.2	67	79	14	146	30	4	1	63	1.23
267073--267160	40	2.2	41	84	10	110	30	4	0	64	1.13
267241--267297	20	2.9	19	75	14	62	22	8	1	66	1.29
268113--268158	20	2.3	20	96	0	83	28	32	39	0	1.57
271584--271658	23	3.3	22	79	7	78	78	6	13	1	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272251--272305	22	2.5	22	96	0	101	36	25	12	25	1.91
273131--274611	106	14.0	106	88	1	2093	34	24	17	23	1.96
275201--275305	37	2.8	37	85	0	138	40	15	13	30	1.85
275769--275797	2	14.5	2	100	0	58	48	0	0	51	1.00
275849--275896	21	2.2	22	85	10	64	37	4	0	58	1.18
275849--275899	11	4.5	11	74	16	50	37	3	0	58	1.16
276084--276152	20	3.4	19	71	23	59	26	2	1	69	1.11
276094--276152	22	2.8	20	80	12	57	25	3	1	69	1.13
276224--276291	19	3.5	19	75	16	68	23	7	1	67	1.24
280117--280158	22	1.9	22	85	9	59	19	9	2	69	1.28
282110--282181	34	2.1	34	100	0	144	16	16	8	58	1.61
284716--284764	14	3.6	14	78	13	57	28	0	0	71	0.86
284711--284759	3	17.3	3	75	12	50	28	2	0	69	1.00
284716--284773	28	2.1	28	87	6	82	27	3	0	68	1.05
288081--288267	29	6.6	29	88	3	254	35	2	16	45	1.60
288080--288267	57	3.3	58	90	3	283	36	2	16	45	1.60
288081--288267	86	2.2	85	88	0	266	35	2	16	45	1.60
295418--295461	19	2.3	19	92	4	70	27	22	29	20	1.99
295495--295582	25	3.2	26	85	11	97	36	7	13	42	1.74
295539--295659	29	4.2	29	93	0	188	32	3	19	44	1.67
295573--295625	17	3.4	17	65	24	53	33	0	20	45	1.52
295931--295971	22	1.9	22	85	5	57	39	26	12	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297441--297524	23	3.7	23	81	7	93	20	13	22	44	1.86
298004--298030	2	13.5	2	100	0	54	51	0	0	48	1.00
299077--299106	15	1.9	16	93	6	53	43	3	13	40	1.60
305016--305147	13	10.8	12	66	19	60	31	36	3	28	1.75
305016--305150	23	5.6	23	69	25	75	31	36	3	28	1.75
305016--305164	36	4.1	36	94	1	246	30	35	4	29	1.76
305598--305644	14	3.1	15	75	12	51	72	6	19	2	1.17
309512--309643	13	10.8	12	66	19	60	31	36	3	28	1.75
309512--309646	23	5.6	23	69	25	75	31	36	3	28	1.75
309512--309663	36	4.2	36	94	1	252	30	36	3	28	1.76
315361--315637	72	3.8	72	81	6	306	36	12	20	29	1.90
315389--315637	36	6.8	36	65	7	126	36	12	20	30	1.90
315675--315763	21	4.5	21	73	18	84	42	13	22	21	1.87
315778--315869	34	2.6	36	86	6	118	41	11	20	26	1.87
315712--316103	166	2.4	167	91	3	630	40	13	19	27	1.89
315684--315926	99	2.4	102	81	9	300	40	12	20	27	1.88
315814--315991	67	2.7	65	83	6	211	39	11	20	28	1.88
315944--316026	35	2.3	35	89	2	121	40	14	22	21	1.90
315878--316093	100	2.1	102	84	5	294	38	13	20	26	1.90
317694--317724	2	15.5	2	100	0	62	48	0	0	51	1.00
318822--319112	149	2.0	148	84	2	386	18	25	20	35	1.96
322136--322176	18	2.3	17	84	12	55	2	12	0	85	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322135--322173	13	3.0	13	88	7	53	2	15	0	82	0.79
329162--329357	39	5.0	39	81	1	214	32	22	25	18	1.97
330127--330188	24	2.5	24	92	2	97	35	24	24	16	1.95
332249--332409	21	7.7	21	73	14	136	20	21	22	34	1.96
332243--332409	42	4.0	41	89	4	228	20	22	22	34	1.97
332242--332409	63	2.7	63	76	14	159	20	22	22	34	1.97
332429--332453	6	4.2	6	100	0	50	36	48	16	0	1.46
334387--334438	21	2.4	21	87	3	68	34	7	5	51	1.54
338766--338799	2	17.0	2	100	0	68	50	0	0	50	1.00
343747--343788	21	2.0	21	86	9	59	35	14	11	38	1.83
344824--344855	2	16.0	2	100	0	64	50	0	0	50	1.00
345116--345185	11	6.7	11	76	11	58	82	1	11	4	0.86
345124--345180	18	3.2	17	82	12	62	84	0	12	3	0.75
345110--345185	21	3.8	20	80	13	84	81	1	13	3	0.89
347114--347445	110	3.0	110	89	4	487	29	9	19	41	1.83
347633--347789	59	2.6	59	88	3	235	28	29	13	28	1.94
347812--347898	41	2.1	41	85	6	113	28	21	17	32	1.96
349436--349473	19	2.0	19	89	0	58	21	13	7	57	1.60
349458--349518	32	1.9	31	83	6	77	21	3	11	63	1.41
349987--350024	13	2.7	15	88	8	53	26	0	0	73	0.83
349982--350019	13	3.0	13	96	3	69	28	0	0	71	0.87
355796--355851	24	2.3	24	100	0	112	32	23	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359720--359777	21	2.8	21	91	0	89	10	29	37	22	1.87
362150--362668	194	2.7	192	83	5	604	40	11	16	31	1.85
363808--363873	3	21.7	3	84	9	71	37	0	0	62	0.96
372031--372944	257	3.7	256	79	9	906	33	15	16	34	1.91
375645--375695	19	2.6	19	84	3	66	47	7	13	31	1.72
378409--378513	37	2.8	37	83	0	129	40	14	13	31	1.84
378961--378997	2	18.5	2	94	0	65	45	0	2	51	1.15
379242--379277	19	1.9	18	88	5	54	30	2	2	63	1.22
383798--383851	13	3.9	13	81	11	54	79	5	14	0	0.90
383795--383854	15	3.9	15	79	16	70	78	6	15	0	0.95

Tables:   1   2   3   4   5   6