genome.fa.s9259.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009259.1 Hibiscus syriacus cultivar Beakdansim tig00112910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1149570

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558609--558642	10	3.4	10	87	0	50	64	2	0	32	1.08
561226--561267	21	2.0	21	85	0	57	33	9	7	50	1.62
561262--561364	33	3.2	33	95	2	183	30	7	17	44	1.77
561425--561457	16	2.0	17	94	5	59	30	6	9	54	1.56
563080--563104	2	12.5	2	100	0	50	52	0	0	48	1.00
567286--567391	53	2.0	53	100	0	212	45	18	11	24	1.82
576605--576669	30	2.2	30	86	5	96	27	10	13	47	1.76
578854--578878	2	12.5	2	100	0	50	52	0	0	48	1.00
581339--581406	30	2.3	30	92	0	109	35	33	16	14	1.89
583696--583736	2	20.5	2	100	0	82	51	0	0	48	1.00
584629--584661	18	1.9	17	88	11	50	54	3	9	33	1.47
585344--585374	4	8.0	4	92	7	55	22	0	0	77	0.77
591625--591679	15	3.8	14	84	15	76	70	0	0	29	0.87
600155--600185	16	2.0	15	93	6	53	12	6	3	77	1.08
603348--603388	2	21.0	2	90	5	66	46	0	0	53	1.00
607752--607795	21	2.0	22	82	4	54	45	0	6	47	1.29
608033--608066	17	2.0	17	88	11	52	64	0	5	29	1.17
608063--608104	16	2.6	16	85	14	52	64	0	0	35	0.94
610284--610617	114	2.9	114	95	0	605	32	18	13	35	1.90
612767--612868	7	14.6	7	75	20	90	0	12	2	83	0.81
612769--612846	21	3.7	21	88	10	106	0	11	0	88	0.52
612768--612842	38	2.0	36	89	5	114	0	10	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612827--612879	26	2.0	26	96	0	97	3	13	11	71	1.26
612768--612838	1	71.0	1	82	0	79	0	9	0	90	0.46
612770--612846	10	7.3	10	88	8	109	0	11	0	88	0.52
615696--615736	14	2.9	14	86	10	57	58	9	14	17	1.62
615697--615746	21	2.4	22	90	6	77	58	8	14	20	1.61
617198--617231	17	2.0	17	88	11	52	64	0	5	29	1.17
617237--617288	15	3.7	14	78	21	56	61	0	1	36	1.07
617719--617744	10	2.6	10	100	0	52	11	30	0	57	1.34
618500--618562	3	20.3	3	83	6	81	61	0	0	38	0.96
618500--618562	28	2.2	28	91	0	99	61	0	0	38	0.96
618498--618561	25	2.4	28	84	7	89	62	0	0	37	0.95
618807--618851	18	2.4	18	85	3	54	55	4	0	40	1.20
619922--619961	21	1.9	21	85	10	55	65	2	20	12	1.38
619964--620000	19	1.9	19	89	10	58	70	2	10	16	1.27
621156--621591	85	5.2	84	78	7	402	31	19	16	31	1.95
621156--621591	166	2.6	169	82	6	528	31	19	16	31	1.95
624832--624869	20	1.9	20	88	0	58	31	23	10	34	1.89
627874--627918	18	2.5	18	88	0	63	22	37	33	6	1.80
630405--630489	31	2.8	31	78	8	111	16	24	30	28	1.96
630460--630509	23	2.2	23	85	7	66	20	22	28	30	1.98
633332--633370	20	2.0	20	89	0	60	33	23	10	33	1.88
636372--636422	23	2.2	23	82	6	59	82	11	3	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638081--638124	20	2.3	19	92	7	72	77	0	11	11	1.00
645517--645550	6	5.7	6	89	0	50	44	2	32	20	1.67
646948--647001	24	2.2	24	87	9	83	33	5	9	51	1.57
646959--647011	24	2.2	24	83	6	63	37	3	9	49	1.53
648473--649805	199	6.7	199	90	2	1990	39	13	14	31	1.85
648473--649805	393	3.4	396	89	3	1997	39	13	14	31	1.85
652134--652177	23	1.9	23	90	0	70	31	11	11	45	1.76
652141--652190	23	2.2	23	92	0	82	32	14	12	42	1.82
652277--652350	23	3.2	23	90	0	103	33	18	8	39	1.81
651996--652519	158	3.3	157	76	9	569	33	12	11	41	1.80
653427--653463	16	2.3	16	90	9	58	48	40	10	0	1.38
654069--654105	16	2.3	16	100	0	74	27	24	16	32	1.96
654158--654228	31	2.2	32	85	2	90	38	23	16	21	1.93
654769--654830	31	2.0	31	93	6	108	20	19	9	50	1.76
658532--658611	24	3.4	24	91	3	119	27	13	13	45	1.82
659374--659902	130	4.1	130	99	0	1040	31	15	19	33	1.93
663783--663822	20	2.0	21	95	5	73	25	20	22	32	1.98
667731--667795	2	32.5	2	100	0	130	50	0	0	49	1.00
669803--669946	60	2.4	60	79	6	150	34	20	4	40	1.72
670079--670226	29	5.0	29	66	18	81	39	4	22	33	1.73
670079--670238	60	2.7	59	86	3	205	40	4	22	33	1.74
673004--673146	42	3.5	42	74	14	152	36	19	20	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673004--673266	42	6.4	41	73	15	145	36	17	19	25	1.94
673171--673329	40	3.9	41	83	4	207	35	14	18	30	1.91
673171--673328	81	2.0	80	86	3	219	36	14	18	30	1.91
673153--673330	40	4.4	40	80	7	189	34	14	18	33	1.91
674688--675114	41	10.4	41	80	8	298	30	17	17	35	1.93
674992--675119	43	3.0	42	85	8	154	33	14	16	35	1.89
680210--680547	43	7.9	43	87	1	455	33	24	13	28	1.94
680181--680547	129	2.8	129	87	1	504	33	24	13	28	1.94
692611--692684	24	3.1	24	94	0	112	9	39	16	35	1.81
708429--708531	53	1.9	53	92	0	170	33	17	16	32	1.92
715156--715206	20	2.5	20	100	0	102	33	7	5	52	1.54
715311--715356	6	8.0	6	80	7	51	10	2	4	82	0.89
715962--716005	18	2.4	18	85	7	54	27	4	0	68	1.09
725470--725579	30	3.4	30	72	18	94	39	10	6	44	1.63
726227--726387	42	3.7	42	74	11	144	33	18	13	34	1.89
726838--726868	15	2.1	15	100	0	62	0	25	0	74	0.82
727554--727633	5	15.4	5	82	16	85	3	17	0	78	0.89
727560--727633	25	2.9	25	88	9	105	2	17	0	79	0.84
736580--737417	420	2.0	420	98	0	1631	39	12	17	30	1.87
739685--739736	18	2.7	20	79	11	54	38	9	15	36	1.80
749812--749870	25	2.4	25	97	0	109	15	16	33	33	1.91
754476--754510	18	1.9	18	88	0	52	11	25	25	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764866--764955	19	4.7	19	73	5	92	32	4	4	58	1.38
764867--764978	57	2.0	56	82	7	136	32	5	6	56	1.47
770876--771018	74	2.0	71	86	4	196	51	9	9	28	1.67
772270--772314	23	2.0	23	83	8	58	26	2	0	71	0.98
775943--776307	97	3.8	96	87	3	517	29	18	25	27	1.98
776082--776307	42	4.9	42	70	21	141	28	18	25	27	1.98
776312--777209	91	9.9	91	88	1	1286	24	21	16	37	1.93
777679--777711	16	2.1	16	94	0	57	48	18	18	15	1.81
777695--777816	36	3.5	36	73	6	133	41	14	18	25	1.88
777695--778059	69	5.6	65	76	12	320	38	13	20	27	1.90
777602--777893	151	1.9	150	82	6	356	39	14	20	26	1.91
777842--777923	20	4.2	20	74	17	66	41	13	21	23	1.88
777759--777984	121	1.8	124	87	4	341	38	13	20	26	1.90
777695--778060	191	1.9	191	90	1	581	39	13	20	27	1.90
777880--778050	70	2.5	68	85	3	229	36	14	21	27	1.92
777950--778267	174	1.8	175	84	2	433	40	12	19	27	1.87
777863--778173	36	8.9	36	73	8	257	39	13	20	25	1.90
778200--778299	36	2.7	37	82	1	130	44	9	17	30	1.79
778339--778510	90	1.9	88	89	2	263	34	21	17	26	1.95
778536--778748	42	5.0	42	73	7	180	27	29	16	26	1.97
778502--778747	127	1.9	127	91	1	404	28	28	15	27	1.96
780039--780101	28	2.2	28	85	0	81	20	6	34	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783783--783834	28	1.9	26	84	7	68	61	7	13	17	1.54
784576--784620	2	22.5	2	100	0	90	51	0	0	48	1.00
784415--784755	180	1.9	179	95	1	612	41	9	12	37	1.75
784897--784994	49	2.0	49	100	0	196	42	20	8	28	1.80
791097--791144	18	2.6	19	75	24	57	29	2	8	60	1.37
791664--791691	14	2.0	14	100	0	56	28	14	7	50	1.69
792702--792747	18	2.6	18	89	6	67	47	0	6	45	1.28
792789--792834	21	2.2	21	100	0	92	50	0	21	28	1.49
795374--795407	16	2.1	16	100	0	68	61	20	5	11	1.50
798115--798183	30	2.3	30	89	0	102	46	7	17	28	1.75

Tables:   1   2   3   4   5   6