genome.fa.s9259.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009259.1 Hibiscus syriacus cultivar Beakdansim tig00112910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1149570

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987164--987292	18	7.3	18	69	26	89	48	1	10	39	1.46
987419--987468	3	17.7	3	88	12	79	36	0	0	64	0.94
993816--993860	21	2.1	21	84	8	56	62	6	11	20	1.50
1002071--1002185	44	2.7	43	90	5	178	49	2	9	38	1.49
1002096--1002180	24	3.6	24	71	18	81	49	3	10	36	1.55
1002096--1002145	25	2.0	26	84	4	66	50	4	10	36	1.55
1002122--1002164	18	2.3	18	88	4	59	51	2	9	37	1.47
1002069--1002214	44	3.3	45	85	7	169	49	2	8	39	1.49
1002289--1002329	3	13.7	3	100	0	82	34	0	0	65	0.93
1006738--1006822	38	2.2	38	85	0	107	35	16	8	40	1.78
1006755--1006890	67	2.0	67	81	2	157	32	15	10	41	1.81
1006574--1007042	167	2.8	167	86	3	606	31	15	11	41	1.82
1006772--1006904	67	2.0	67	80	2	151	35	15	9	40	1.78
1006922--1007197	144	1.9	145	88	4	414	34	14	10	40	1.80
1007605--1007651	5	9.6	5	88	9	62	85	0	0	14	0.61
1007604--1007651	19	2.5	19	87	12	64	85	0	0	14	0.60
1011859--1011914	12	4.8	12	70	12	53	37	1	35	25	1.66
1013691--1013733	19	2.3	19	91	0	68	30	18	16	34	1.93
1013698--1013735	19	2.0	19	100	0	76	31	15	15	36	1.90
1016498--1016553	12	4.8	12	86	4	69	35	0	37	26	1.57
1016500--1016553	24	2.3	23	87	3	81	35	0	37	27	1.57
1019832--1019883	26	2.0	26	96	0	95	42	5	7	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023801--1023841	19	2.2	19	86	0	55	21	31	24	21	1.98
1023854--1023963	58	1.9	56	83	7	141	30	8	17	43	1.78
1023869--1023985	29	4.0	29	84	2	126	31	5	17	45	1.72
1026991--1027021	16	1.9	16	100	0	62	19	16	19	45	1.86
1028860--1028928	18	3.6	18	74	14	66	26	30	21	21	1.99
1029966--1030018	26	2.0	26	82	7	63	43	15	0	41	1.46
1030411--1030567	64	2.4	63	80	10	158	29	17	19	33	1.95
1032340--1032443	29	3.6	29	90	3	147	51	7	19	21	1.71
1033401--1033489	7	12.7	7	80	4	90	41	37	1	20	1.60
1046198--1046349	77	1.9	79	84	5	202	45	7	11	35	1.69
1050701--1050764	33	1.9	33	90	0	101	17	12	20	50	1.78
1053756--1053804	18	2.7	18	93	0	80	24	16	16	42	1.87
1054330--1054371	16	2.6	16	92	0	66	14	28	14	42	1.84
1065219--1065257	20	2.0	20	84	0	51	30	17	7	43	1.77
1069918--1070459	54	10.1	54	86	2	675	31	19	19	29	1.96
1074477--1074621	45	3.2	44	89	3	218	26	18	7	47	1.75
1074998--1075821	54	15.3	54	90	1	1181	32	19	18	29	1.96
1079024--1079057	18	1.9	18	88	5	52	50	0	0	50	1.00
1094179--1094302	46	2.8	44	87	7	178	39	8	20	31	1.82
1094702--1094757	21	2.7	21	100	0	112	23	33	19	23	1.97
1094761--1094794	13	2.6	13	90	0	50	17	17	14	50	1.79
1096777--1096812	17	2.1	18	90	10	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097167--1097335	60	2.8	59	80	10	182	39	5	21	33	1.77
1120227--1120251	2	12.5	2	100	0	50	52	0	0	48	1.00
1122067--1122729	85	7.8	85	86	1	868	25	18	20	34	1.96
1122067--1122721	254	2.6	254	87	0	929	25	18	20	34	1.96
1124909--1124989	21	4.0	20	72	18	60	74	6	6	13	1.21
1124925--1124984	18	3.2	18	80	13	66	75	6	3	15	1.15
1124923--1124986	20	3.2	21	80	12	73	76	6	3	14	1.10
1125038--1125136	32	3.2	30	78	13	85	70	11	5	13	1.31
1125067--1125126	32	1.9	32	89	3	95	73	6	6	13	1.24
1125038--1125126	32	2.8	32	81	11	87	71	8	5	13	1.28
1126971--1127043	36	2.0	36	97	0	137	30	19	13	36	1.90
1127011--1127649	81	7.9	81	88	0	864	31	19	12	35	1.89
1128057--1128237	94	1.9	95	88	3	276	26	25	12	35	1.91
1130064--1130089	10	2.6	10	100	0	52	92	7	0	0	0.39
1130076--1130113	17	2.2	17	90	9	60	76	15	7	0	1.01
1137079--1137104	5	5.2	5	100	0	52	19	38	19	23	1.93
1139499--1139810	163	1.9	164	86	3	450	25	13	17	42	1.87
1142377--1142417	22	2.0	21	85	9	57	24	24	24	26	2.00

Tables:   1   2   3   4   5   6

The End!