genome.fa.s9576.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009576.1 Hibiscus syriacus cultivar Beakdansim tig00116944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1684752

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627711--1627791	33	2.5	33	89	0	117	12	20	19	46	1.82
1627768--1627831	21	3.1	21	82	6	78	12	20	15	51	1.75
1627796--1627838	20	2.2	20	86	0	59	13	13	20	51	1.76
1627806--1627846	20	2.0	20	85	0	55	17	14	12	56	1.68
1628325--1628538	20	10.6	20	78	6	234	18	19	24	37	1.94
1628327--1628538	41	5.2	41	91	1	338	18	18	24	37	1.94
1628555--1628599	20	2.2	20	88	0	63	15	17	20	46	1.84
1628588--1628637	21	2.4	21	90	6	75	30	22	26	22	1.99
1628649--1628702	20	2.7	19	73	18	56	16	18	31	33	1.93
1630503--1630542	20	2.0	20	90	0	62	47	12	2	37	1.55
1630556--1630595	20	2.0	21	85	14	57	45	10	5	40	1.60
1630607--1630647	20	2.0	21	90	4	66	39	17	7	36	1.77
1630501--1630648	53	2.8	51	89	5	233	47	12	5	34	1.64
1634959--1634998	20	2.0	20	90	9	64	47	10	5	37	1.59
1634955--1635104	53	2.9	52	94	3	257	48	12	6	32	1.67
1635012--1635051	20	2.0	21	90	5	64	45	15	5	35	1.68
1635063--1635103	20	2.0	21	90	4	66	39	17	7	36	1.77
1635742--1635834	46	2.0	46	100	0	186	29	15	23	32	1.95
1638988--1639020	17	2.0	17	88	5	50	21	18	12	48	1.80
1640168--1640213	24	2.0	23	83	12	58	52	2	0	45	1.13
1651809--1651997	99	1.9	99	87	2	281	28	13	16	41	1.86
1651908--1652191	103	2.7	105	78	4	284	28	14	16	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653818--1653869	3	17.0	3	80	11	61	32	0	3	63	1.12
1657192--1657216	2	12.5	2	100	0	50	52	48	0	0	1.00
1658997--1659137	72	2.0	72	94	2	248	43	20	9	26	1.83
1660181--1660227	23	2.0	23	83	0	58	65	6	2	25	1.27
1673114--1673605	243	2.0	243	98	0	941	36	18	20	24	1.95
1675109--1675139	15	2.1	15	93	0	53	45	6	16	32	1.72

Tables:   1   2   3   4   5   6   7   8   9   10

The End!