genome.fa.s9576.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009576.1 Hibiscus syriacus cultivar Beakdansim tig00116944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1684752

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235840--235938	33	3.0	33	94	1	164	32	7	15	45	1.73
235924--235978	13	4.2	13	75	13	58	34	3	12	49	1.59
236174--236222	21	2.3	21	89	0	71	24	24	24	26	2.00
236186--236226	21	2.0	21	100	0	82	19	24	24	31	1.98
236373--236425	15	3.4	15	72	10	52	35	7	9	47	1.64
236519--236550	16	2.0	17	88	11	50	43	21	21	12	1.86
237147--237222	36	2.1	36	97	0	143	43	14	10	31	1.79
241699--241728	15	2.0	15	100	0	60	13	46	26	13	1.80
242151--242226	36	2.1	36	97	0	143	43	14	10	31	1.79
246434--246484	23	2.2	23	89	0	75	49	3	9	37	1.55
258810--258844	16	2.1	17	94	5	63	31	8	25	34	1.86
264261--264475	107	2.0	107	100	0	430	38	9	16	35	1.81
265805--265854	2	26.0	2	88	8	77	50	0	2	48	1.12
268617--268857	82	3.0	80	77	11	206	28	15	22	33	1.94
271742--271785	22	2.0	23	90	4	72	31	6	11	50	1.65
274120--274163	22	2.0	23	90	4	72	31	6	11	50	1.65
275726--275769	21	2.1	21	95	0	79	50	13	31	4	1.62
277369--277438	34	2.1	34	84	5	90	24	27	15	32	1.95
277795--277868	20	3.7	20	78	7	78	29	22	25	21	1.99
277903--277945	22	1.9	23	90	4	70	20	20	32	25	1.97
278046--278104	29	2.0	29	90	6	91	42	16	6	33	1.75
278995--279037	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286103--286202	50	2.0	51	88	2	148	28	4	18	50	1.65
287311--287356	22	2.1	22	100	0	92	36	15	17	30	1.91
287891--287919	2	14.5	2	100	0	58	51	0	0	48	1.00
288235--288273	19	2.1	19	90	0	60	33	25	15	25	1.95
288378--288529	20	7.5	19	80	10	133	32	28	17	21	1.96
288377--288472	41	2.3	41	98	0	183	35	27	16	20	1.94
288377--288493	21	5.7	21	83	9	143	36	26	15	21	1.93
291099--291139	20	2.0	20	100	0	82	56	19	14	9	1.66
291099--291154	20	2.8	20	88	0	67	50	25	16	8	1.74
291762--291838	21	3.7	21	67	10	59	22	18	23	36	1.95
291791--291875	20	4.2	20	71	14	75	24	18	24	31	1.98
292119--292171	27	2.0	27	81	7	63	33	1	3	60	1.26
294477--294576	21	4.8	21	86	2	148	31	31	17	21	1.95
294474--294576	41	2.5	41	85	1	152	30	30	17	22	1.97
296611--296700	42	2.1	43	81	6	112	36	20	14	28	1.92
296635--296733	42	2.3	42	82	1	117	40	18	12	29	1.86
296687--296872	82	2.3	82	80	7	216	38	22	11	27	1.88
299409--299453	22	2.0	24	83	16	60	51	13	2	33	1.53
302620--302727	46	2.3	44	80	12	110	73	1	9	15	1.17
302702--302835	4	33.8	4	71	20	50	68	0	1	29	1.03
302727--302870	35	4.1	35	84	12	172	64	0	2	33	1.05
302730--302864	33	4.1	33	82	11	161	65	0	2	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302747--302887	2	74.0	2	78	14	84	60	0	1	37	1.05
304038--304134	41	2.6	38	82	12	119	25	7	23	43	1.79
304120--304222	36	2.8	37	86	4	138	40	14	19	25	1.89
304129--304227	37	2.7	36	86	9	130	43	15	19	22	1.87
304381--304567	36	5.4	36	71	13	149	39	12	19	28	1.88
304354--304591	101	2.4	101	93	0	404	36	12	19	32	1.89
304501--304678	87	2.1	87	95	1	322	35	11	19	33	1.88
304936--305257	106	3.0	106	87	0	439	23	19	23	33	1.97
305853--305941	31	2.8	32	87	3	135	38	19	12	30	1.88
306850--306987	69	2.0	69	84	0	177	25	14	20	39	1.90
307059--307108	13	3.7	14	84	7	68	2	18	4	76	1.04
307058--307110	27	2.0	26	92	3	88	3	16	3	75	1.10
307065--307115	13	3.5	15	76	17	54	1	15	5	76	1.07
310213--310292	13	6.7	12	75	17	69	77	1	3	17	0.98
310180--310261	23	3.4	23	71	17	60	74	0	9	15	1.07
310201--310338	45	3.0	44	75	16	120	72	0	3	23	1.05
310274--310362	44	2.1	44	85	6	121	65	1	2	31	1.12
310212--310335	9	13.0	9	72	20	51	72	0	2	24	1.02
310214--310340	13	9.4	13	70	19	66	73	0	2	23	1.00
315295--315388	29	3.2	29	80	8	109	20	11	7	60	1.55
315366--315466	29	3.4	29	75	14	89	16	8	15	58	1.62
321332--321404	15	4.7	15	80	11	69	71	8	15	5	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321332--321371	17	2.5	17	88	8	57	70	10	12	7	1.35
322456--322574	30	3.8	31	83	8	134	29	15	24	30	1.96
322837--323249	123	3.4	123	90	0	585	30	27	15	26	1.96
323687--323749	3	21.3	3	93	3	110	34	0	0	65	0.93
325148--325240	30	3.1	30	89	3	134	20	15	5	59	1.55
325155--325242	29	3.0	30	89	3	133	17	15	6	60	1.56
327187--327217	14	2.2	14	94	0	53	16	12	12	58	1.64
327184--327237	24	2.2	24	86	0	72	18	11	12	57	1.64
327403--327508	10	9.9	10	78	8	95	15	11	14	59	1.61
327407--327591	10	16.5	10	72	13	73	12	11	17	57	1.64
328188--328224	7	5.4	7	93	6	67	86	0	13	0	0.57
330835--330959	64	1.9	64	88	4	189	28	18	21	31	1.97
330837--330974	64	2.2	63	83	7	163	29	18	21	30	1.97
340324--340503	64	2.8	62	77	10	175	28	18	23	29	1.98
340344--340503	65	2.5	64	82	7	191	29	18	22	30	1.97
345916--345967	27	1.9	27	96	0	95	23	23	23	30	1.99
346197--346239	20	2.2	20	86	0	59	34	20	13	30	1.92
348828--348862	13	2.7	13	86	0	52	62	0	25	11	1.28
356175--356229	27	2.0	27	96	0	101	20	23	27	29	1.99
356459--356501	20	2.2	20	86	0	59	34	20	13	30	1.92
356568--356619	19	2.7	20	84	6	70	26	17	26	28	1.97
356586--356761	95	1.9	94	84	3	237	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356589--356809	95	2.3	94	79	6	214	31	16	25	27	1.96
357153--357285	57	2.3	57	97	0	248	36	12	19	32	1.89
357824--357849	10	2.6	10	100	0	52	69	0	0	30	0.89
359344--359385	3	14.0	3	85	9	59	64	0	0	35	0.94
359344--359385	18	2.3	18	92	8	68	64	0	0	35	0.94
359598--359910	139	2.3	138	82	4	364	26	20	14	38	1.91
359848--360513	123	5.6	122	84	6	648	26	19	14	39	1.90
360207--360505	113	2.7	112	92	1	510	26	20	15	37	1.92
360515--360774	73	3.6	73	88	0	358	40	10	16	32	1.82
361491--361545	22	2.5	22	87	0	83	40	12	10	36	1.79
361912--362065	54	2.9	55	87	2	206	27	23	12	36	1.91
362958--363126	75	2.3	75	91	0	266	30	21	14	32	1.94
365190--365241	17	3.2	17	75	10	54	51	13	1	32	1.52
368778--368859	43	1.9	42	90	2	128	35	24	9	30	1.88
369324--369426	36	2.9	36	89	0	161	26	12	20	40	1.88
370841--370881	2	22.0	2	80	14	52	48	0	0	51	1.00
370841--370875	15	2.4	15	95	4	63	48	0	0	51	1.00
370840--370882	21	2.0	21	90	9	68	48	0	0	51	1.00
371090--371185	20	4.8	20	84	6	124	39	23	15	20	1.91
372102--372155	24	2.2	24	90	0	81	24	14	18	42	1.88
373472--373526	20	2.8	20	97	0	101	45	21	20	12	1.84
373523--373585	20	3.2	19	88	2	81	12	14	23	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375358--375433	29	2.6	29	85	8	109	6	17	40	35	1.75
375437--375478	3	14.0	3	85	9	59	64	0	0	35	0.94
375437--375478	15	2.8	15	92	7	68	64	0	0	35	0.94
375504--376197	57	12.2	57	92	0	1093	36	12	19	32	1.89
376775--376982	45	4.6	45	89	0	317	46	7	22	24	1.77
385646--385707	24	2.5	26	70	19	60	33	4	9	51	1.56
387994--388106	37	3.1	36	87	2	163	33	7	23	35	1.84
395732--395811	39	2.1	39	100	0	160	50	10	11	28	1.70
396770--396812	22	1.9	23	95	4	79	44	0	0	55	0.99
398767--398798	17	1.9	16	93	6	55	12	9	3	75	1.16

Tables:   1   2   3   4   5   6   7   8   9   10