genome.fa.s9576.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009576.1 Hibiscus syriacus cultivar Beakdansim tig00116944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1684752

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  9  of  10  ( 1108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430092--1430298	84	2.5	84	88	6	287	25	21	24	28	1.99
1430172--1430268	51	1.9	51	89	4	151	24	21	25	27	1.99
1430239--1430301	15	4.0	15	70	11	54	25	20	25	28	1.99
1430228--1430317	33	2.7	33	85	0	117	27	18	22	31	1.97
1431220--1431379	82	2.0	82	94	0	284	38	11	11	38	1.78
1434080--1434191	33	3.4	34	82	7	133	16	29	29	24	1.97
1434435--1434666	48	4.8	48	81	3	261	16	19	35	28	1.93
1434442--1434666	96	2.3	96	88	1	326	16	19	35	28	1.94
1442310--1442455	60	2.5	60	83	9	201	33	13	19	33	1.91
1449186--1449228	2	21.5	2	100	0	86	48	0	0	51	1.00
1459480--1459504	3	8.3	3	100	0	50	68	0	0	32	0.90
1463441--1463546	20	5.2	20	77	6	97	32	24	17	25	1.97
1464056--1464122	19	3.5	19	81	2	80	49	25	16	8	1.74
1464118--1464262	19	8.1	19	74	18	114	12	24	20	42	1.86
1464151--1464237	33	2.7	32	90	3	138	11	26	22	39	1.88
1464205--1464262	20	2.9	20	80	10	64	13	24	18	43	1.87
1465060--1465216	64	2.5	61	82	11	167	33	17	21	27	1.96
1465703--1465737	18	1.9	18	88	11	54	54	5	17	22	1.64
1466064--1466091	2	14.0	2	100	0	56	50	0	0	50	1.00
1466637--1466944	146	2.1	145	92	1	519	25	17	22	34	1.95
1466912--1466956	23	2.0	23	86	0	63	22	24	26	26	2.00
1468984--1469086	51	2.0	52	98	1	199	23	17	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469697--1469763	21	3.2	21	66	6	55	23	35	20	19	1.95
1469645--1469763	42	2.8	42	81	5	107	22	36	18	22	1.95
1471101--1471136	14	2.6	14	95	0	63	30	0	25	44	1.54
1471261--1471298	14	2.7	14	95	0	67	42	23	23	10	1.85
1471313--1471439	33	3.9	32	84	8	175	14	22	19	42	1.88
1471315--1471439	19	7.4	18	66	24	67	15	22	19	43	1.88
1471306--1471438	66	2.0	66	94	0	230	16	22	19	41	1.90
1473606--1473630	12	2.1	12	100	0	50	0	28	0	72	0.86
1473800--1473852	23	2.2	24	86	3	72	41	20	16	20	1.90
1474586--1474636	20	2.5	20	100	0	102	29	19	31	19	1.97
1474849--1474918	20	3.5	20	98	1	133	32	27	24	15	1.95
1474963--1475001	20	2.0	20	94	0	69	12	10	30	46	1.75
1475084--1475120	14	2.6	14	86	0	56	48	21	0	29	1.50
1476986--1477039	20	2.7	20	77	11	65	40	24	20	14	1.90
1477042--1477099	14	3.9	14	79	16	71	48	24	17	10	1.78
1477026--1477115	32	2.8	33	89	3	137	47	24	16	11	1.79
1477111--1477173	18	3.7	18	75	18	71	12	20	22	44	1.85
1477158--1477201	20	2.2	20	88	4	63	18	25	20	36	1.95
1477700--1477744	18	2.5	18	85	0	63	15	15	42	26	1.87
1479064--1479122	20	3.0	20	87	0	73	42	22	18	16	1.89
1479577--1479711	20	6.7	20	80	7	121	24	17	24	33	1.96
1479577--1479714	61	2.3	61	85	0	195	23	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479577--1479732	61	2.6	61	81	2	143	23	19	23	33	1.97
1479782--1479822	21	2.0	21	85	0	55	34	31	17	17	1.93
1483806--1483865	20	3.0	20	82	7	68	28	28	18	25	1.98
1484107--1484136	12	2.5	12	94	0	51	20	20	0	60	1.37
1486002--1486179	81	2.2	83	84	5	236	27	18	25	28	1.98
1486086--1486130	17	2.6	17	86	10	56	26	20	26	26	1.99
1492409--1492488	21	3.6	22	76	5	81	23	22	26	27	2.00
1503416--1503484	30	2.3	31	78	12	72	39	7	21	31	1.81
1503856--1503928	38	1.9	38	100	0	146	41	8	12	38	1.73
1504144--1504329	75	2.5	75	92	2	304	22	31	25	20	1.98
1511560--1511589	13	2.2	14	94	5	53	46	13	0	40	1.43
1511627--1511699	38	1.9	37	94	2	128	42	6	10	39	1.67
1511909--1511948	21	1.9	21	89	0	62	27	32	25	15	1.95
1511993--1512042	19	2.6	19	100	0	100	16	42	22	20	1.89
1514393--1514472	22	3.6	22	83	3	99	26	16	21	36	1.94
1514418--1514482	12	5.8	12	71	20	50	24	12	24	38	1.90
1514393--1514479	44	2.0	44	88	4	131	25	16	21	36	1.94
1514453--1514482	12	2.4	13	88	11	53	23	10	26	40	1.86
1520013--1520052	2	20.0	2	89	0	62	50	2	2	45	1.28
1520322--1520417	30	3.2	30	92	1	158	32	27	19	20	1.97
1520409--1520504	32	3.0	32	78	13	117	35	18	16	29	1.93
1524216--1524253	2	19.0	2	88	0	58	50	2	2	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524527--1524619	30	3.1	30	90	1	143	31	25	21	21	1.98
1524608--1524705	31	3.2	30	75	13	108	32	17	19	30	1.95
1525599--1525643	21	2.1	21	83	0	54	13	24	31	31	1.93
1526715--1526760	23	2.0	23	83	8	58	30	0	13	56	1.37
1528373--1528432	4	14.5	4	75	6	57	26	3	5	65	1.29
1528376--1528460	38	2.2	38	87	4	118	24	3	9	62	1.41
1528591--1528634	19	2.3	19	84	7	63	40	2	0	56	1.11
1533352--1533476	31	4.0	32	77	8	116	43	8	4	43	1.57
1533352--1533470	63	1.9	61	81	10	143	44	8	5	42	1.56
1533357--1533488	63	2.1	64	79	12	139	42	7	5	44	1.55
1553350--1553385	14	2.7	13	91	8	63	69	5	0	25	1.10
1554054--1554079	6	4.3	6	100	0	52	34	46	19	0	1.50
1554681--1554858	40	4.3	42	90	4	274	35	21	19	22	1.96
1554684--1554858	82	2.1	82	94	0	305	36	22	19	21	1.95
1554681--1554858	21	8.7	19	68	13	95	35	21	19	22	1.96
1554873--1554925	21	2.5	21	90	0	79	18	20	30	30	1.97
1557600--1557628	11	2.6	11	100	0	58	27	37	13	20	1.91
1566814--1566854	19	2.2	19	91	8	66	34	12	34	19	1.89
1567125--1567171	24	1.9	25	82	4	60	40	10	17	31	1.83
1574184--1574216	2	16.5	2	100	0	66	48	0	0	51	1.00
1580766--1580827	24	2.6	24	86	0	88	53	20	12	12	1.72
1580786--1580815	14	2.1	14	93	0	51	56	23	13	6	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583582--1583702	31	3.7	31	68	18	84	70	1	7	20	1.20
1585790--1585856	33	2.0	33	97	0	125	37	25	8	28	1.86
1594882--1594945	31	2.0	32	84	3	85	42	3	12	42	1.58
1598255--1598461	100	2.0	101	86	7	287	36	13	26	23	1.92
1599006--1599384	154	2.5	150	82	5	440	26	16	21	35	1.94
1600286--1600322	18	2.1	18	100	0	74	35	16	5	43	1.71
1602492--1602520	7	4.3	7	91	8	51	55	0	0	44	0.99
1602491--1602519	13	2.2	13	100	0	58	58	0	0	41	0.98
1607541--1607569	2	14.5	2	100	0	58	48	0	0	51	1.00
1611229--1611269	14	2.9	14	92	0	64	34	14	17	34	1.90
1612918--1613031	35	3.3	35	88	2	167	35	20	26	18	1.95
1613134--1613174	14	2.9	14	88	0	55	36	12	17	34	1.87
1615332--1615374	12	3.4	12	81	9	50	79	2	0	18	0.85
1615315--1615367	18	2.9	18	86	13	74	77	0	1	20	0.87
1616595--1616652	10	6.0	10	78	6	57	67	0	6	25	1.16
1616595--1616652	19	3.0	19	78	14	64	67	0	6	25	1.16
1616748--1616918	34	5.0	32	76	17	116	44	7	4	43	1.52
1616736--1616928	73	2.8	67	82	11	221	43	7	4	44	1.52
1616780--1616865	39	2.2	39	89	6	122	43	5	4	46	1.48
1616735--1616946	32	5.9	34	76	16	175	43	7	4	44	1.53
1616740--1616983	107	2.2	105	80	14	239	45	7	4	41	1.53
1619727--1619797	35	2.0	35	100	0	142	40	19	14	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1622494--1622547	20	2.7	19	76	18	65	33	27	18	20	1.96
1622576--1622788	20	10.5	20	74	7	133	37	23	18	20	1.94
1622632--1622789	41	3.9	41	93	0	264	37	24	18	19	1.93
1623467--1623542	20	4.1	20	75	19	92	48	17	21	13	1.80
1623557--1623706	33	4.5	33	91	0	246	14	23	20	41	1.89
1623567--1623686	14	7.5	14	66	24	60	14	22	20	42	1.88
1623808--1623844	14	2.6	14	86	0	56	48	21	0	29	1.50
1625214--1625295	42	2.0	42	82	4	103	24	17	35	23	1.95
1625625--1625945	94	3.4	94	96	1	563	46	18	12	22	1.83
1627645--1627699	20	2.8	19	89	8	83	38	23	23	14	1.92

Tables:   1   2   3   4   5   6   7   8   9   10