genome.fa.s9576.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009576.1 Hibiscus syriacus cultivar Beakdansim tig00116944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1684752

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599714--599790	31	2.7	27	81	14	109	32	10	7	49	1.66
599729--599790	31	2.0	31	96	0	115	33	9	6	50	1.61
614355--614451	30	3.2	29	76	9	97	55	13	5	25	1.58
616620--616667	22	2.1	23	88	11	73	54	0	2	43	1.12
616879--616920	20	2.1	20	95	0	75	35	16	21	26	1.94
616978--617823	105	8.0	105	96	0	1521	22	18	24	33	1.96
616988--617823	316	2.6	316	96	0	1539	22	18	24	33	1.96
616978--617816	421	2.0	423	96	0	1547	22	18	24	33	1.96
630438--630485	22	2.1	23	88	11	73	54	0	2	43	1.12
631575--631604	10	3.0	10	95	0	51	26	33	0	40	1.57
631651--631684	9	3.9	9	84	7	52	35	0	2	61	1.11
631650--631688	17	2.4	17	95	4	71	33	0	5	61	1.18
633848--633921	13	5.8	13	75	15	73	17	0	10	71	1.13
633947--634020	34	2.2	35	81	16	93	22	4	14	58	1.54
634695--634724	15	2.0	15	93	0	51	33	23	6	36	1.81
650792--650883	46	2.0	46	100	0	184	21	23	15	39	1.92
653654--653707	15	3.2	16	79	12	56	64	0	0	35	0.94
654103--654147	22	2.1	21	83	4	54	44	4	6	44	1.50
659985--660030	2	23.5	2	91	4	76	47	0	2	50	1.13
660278--660749	181	2.6	182	89	0	696	43	14	16	26	1.85
662934--663016	21	4.0	21	95	0	139	42	10	28	18	1.84
663052--663117	33	2.0	33	85	5	89	28	0	45	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664820--664868	19	2.6	19	96	0	89	32	2	10	55	1.45
665100--666246	200	5.8	200	93	3	1935	35	14	18	31	1.91
667745--667808	6	10.7	6	86	0	65	39	6	32	21	1.79
667762--667809	3	16.0	3	82	0	60	37	4	33	25	1.75
667745--667808	12	5.3	12	90	0	83	39	6	32	21	1.79
669004--669403	180	2.2	180	95	1	719	34	14	16	34	1.89
669095--669989	301	3.0	302	95	1	1589	34	14	16	35	1.88
669578--669824	120	2.1	120	93	0	422	32	14	14	38	1.87
671360--671430	23	3.2	23	88	8	110	33	5	22	38	1.78
671365--671435	21	3.3	21	90	4	97	33	5	22	38	1.78
674050--674120	27	2.7	27	87	10	78	52	11	2	33	1.52
674064--674120	27	2.1	27	96	0	105	50	10	3	35	1.54
676292--676341	24	2.0	25	92	3	84	52	10	22	16	1.73
679508--679584	40	1.9	41	91	2	129	37	20	5	36	1.75
680824--680910	21	4.0	22	88	4	106	27	20	26	25	1.99
680836--680914	21	3.7	21	90	6	115	27	21	27	22	1.99
681125--681174	23	2.2	23	96	0	91	34	30	2	34	1.69
682005--682054	23	2.2	23	96	0	91	34	30	2	34	1.69
680905--682669	880	2.0	880	96	3	3250	30	21	6	41	1.78
686168--686233	19	3.3	19	81	12	60	18	28	30	22	1.97
686192--686253	23	2.7	23	87	2	72	19	25	30	24	1.98
694034--694115	44	1.9	41	85	7	110	31	4	29	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694036--694126	19	4.4	20	74	17	96	35	4	28	31	1.77
694541--694648	21	5.3	20	71	16	89	35	24	19	21	1.96
694533--694648	40	2.9	40	94	0	196	35	22	19	22	1.96
694533--694629	19	4.9	19	72	11	79	36	21	19	22	1.95
695996--696036	20	2.1	20	82	13	50	48	0	2	48	1.14
701992--702040	2	24.5	2	100	0	98	48	0	0	51	1.00
703449--703645	75	2.6	76	88	5	285	46	4	9	39	1.56
703443--703645	38	5.4	37	77	12	184	45	4	9	40	1.56
703578--703681	54	1.9	53	84	5	138	48	4	5	41	1.48
703579--703693	54	2.2	53	80	4	124	46	5	8	40	1.57
706270--706306	16	2.3	16	90	9	58	37	0	0	62	0.96
709587--709626	10	3.9	10	83	3	53	10	12	0	77	0.99
709584--709626	20	2.2	20	87	8	61	9	13	0	76	1.01
709633--709683	23	2.2	23	92	0	84	23	15	15	45	1.85
709647--709703	23	2.5	23	85	2	71	21	17	10	50	1.75
710768--710864	30	3.2	30	73	1	95	23	11	14	50	1.75
710890--710966	30	2.6	30	80	13	104	27	6	9	57	1.54
710941--711074	72	1.9	70	81	6	162	27	9	9	52	1.65
711373--711399	2	13.5	2	100	0	54	51	0	0	48	1.00
714171--714218	12	4.2	12	81	5	55	43	22	16	16	1.87
714236--714275	13	2.9	14	81	7	55	27	22	22	27	1.99
716775--716810	18	2.1	18	89	5	56	33	5	8	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723534--723636	40	2.6	40	100	0	206	43	12	16	27	1.84
724055--724087	16	2.1	16	100	0	66	6	12	24	57	1.57
727088--727186	33	3.1	32	88	4	146	47	8	24	20	1.77
736420--736452	14	2.4	14	94	0	57	24	3	21	51	1.62
736427--736457	14	2.2	14	94	0	53	25	0	25	48	1.52
738274--738356	24	3.5	23	73	6	76	21	14	16	46	1.83
742176--742274	23	4.3	23	90	2	155	6	22	20	51	1.69
744355--744418	17	3.5	17	69	19	56	15	23	10	50	1.76
744372--744440	22	3.4	22	69	19	76	11	21	15	50	1.76
744353--744454	39	2.6	39	98	1	197	16	21	13	48	1.81
744724--744780	16	3.4	16	69	21	53	19	24	8	47	1.77
745752--745798	21	2.2	21	88	7	69	8	17	0	74	1.05
745761--745806	9	4.9	9	82	17	58	10	13	0	76	1.03
745759--745801	21	2.1	21	95	4	79	9	16	0	74	1.06
745785--745842	28	2.0	29	83	9	75	6	18	1	72	1.16
749365--749394	14	2.1	14	100	0	60	66	0	20	13	1.24
757521--757551	16	1.9	16	93	0	53	61	12	9	16	1.56
764796--764846	20	2.6	20	96	3	95	37	31	13	17	1.89
764902--765133	20	11.5	20	78	9	202	37	26	18	17	1.93
764902--765093	61	3.2	61	81	6	187	37	26	18	17	1.93
764902--765135	81	2.9	80	78	8	258	37	26	18	17	1.93
764940--765133	41	4.8	39	81	9	185	36	26	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765742--765819	24	3.2	24	94	0	129	20	21	19	38	1.94
765994--766020	3	9.0	3	100	0	54	66	0	33	0	0.92
768338--768417	19	4.4	19	67	17	62	46	21	17	15	1.84
768410--768445	14	2.6	14	95	0	63	41	22	27	8	1.82
768335--768461	53	2.6	48	77	12	139	44	19	22	13	1.85
768465--768521	19	3.3	19	69	23	52	15	15	26	42	1.87
768465--768555	33	2.8	33	88	3	121	15	17	23	43	1.87
768497--768555	19	3.4	18	73	22	63	16	18	18	45	1.85
769976--770055	42	1.9	42	82	5	99	23	17	37	21	1.94
772042--772110	31	2.2	32	89	5	104	43	26	20	10	1.83
772128--772217	14	5.7	14	69	23	63	10	23	22	44	1.82
772111--772237	33	3.8	33	95	1	218	10	22	20	47	1.80
772106--772245	19	8.1	18	67	23	70	10	22	19	47	1.80
772168--772243	20	4.2	20	74	22	94	10	23	17	48	1.78
772484--772535	27	2.0	26	88	7	79	21	11	34	32	1.89
772750--772922	20	8.6	20	79	7	197	18	20	25	35	1.95
772752--772922	40	4.2	41	90	1	256	18	19	25	36	1.95
772752--772983	81	2.9	81	83	3	245	18	18	25	37	1.94
772935--772983	20	2.5	20	90	6	73	14	16	24	44	1.84
772749--772983	40	5.8	40	77	9	172	18	19	25	37	1.94
772752--772983	121	1.9	120	82	6	290	18	18	25	37	1.94
774706--774864	65	2.5	64	88	5	223	29	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779433--780046	306	2.0	308	99	0	1205	32	18	15	33	1.92
780400--780450	16	3.3	16	76	15	54	37	0	3	58	1.16
780830--780871	18	2.3	18	84	8	50	16	0	26	57	1.40
780823--780860	18	2.2	18	90	4	60	15	0	28	55	1.41
783613--783678	10	6.4	10	76	11	53	48	4	1	45	1.32
783608--783645	20	1.9	20	88	0	58	47	5	0	47	1.24
784322--784407	2	43.5	2	97	2	165	50	0	0	50	1.00
785771--785845	24	3.1	24	88	3	98	12	10	21	56	1.66
785770--785825	14	4.3	14	78	17	57	8	12	25	53	1.67
786573--786647	10	7.7	10	69	21	61	9	12	21	57	1.62

Tables:   1   2   3   4   5   6   7   8   9   10