genome.fa.s9597.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009597.1 Hibiscus syriacus cultivar Beakdansim tig00116976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1557931

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258927--259017	32	2.8	33	94	3	166	12	18	21	47	1.81
259002--259056	20	2.8	19	83	8	65	16	23	23	36	1.94
259540--259582	18	2.4	18	84	0	59	16	16	41	25	1.88
260902--260944	20	2.2	20	86	0	59	48	20	18	11	1.79
260912--260980	20	3.5	20	93	0	111	34	26	18	20	1.96
261450--261543	20	4.7	20	89	0	125	25	19	26	28	1.98
261614--261654	21	2.0	21	85	0	55	36	31	14	17	1.90
262484--262572	29	3.2	29	67	20	89	43	6	12	37	1.69
262457--262572	55	2.1	54	91	1	187	43	6	12	37	1.69
268168--268240	36	2.0	36	94	0	128	36	6	6	49	1.56
269351--269408	28	2.2	26	81	6	62	22	15	8	53	1.69
271687--271731	23	2.0	23	86	0	63	26	26	26	20	1.99
271699--272014	150	2.1	149	94	1	553	34	20	17	27	1.95
272490--272527	20	1.9	20	88	0	58	10	31	34	23	1.89
278647--278691	23	2.0	23	86	0	63	26	26	26	20	1.99
278659--278974	150	2.1	149	94	1	553	34	21	17	26	1.95
281040--281258	110	2.0	110	99	0	429	21	9	12	56	1.64
281065--281309	110	2.2	108	82	8	237	23	8	14	53	1.68
281839--281879	22	1.9	22	95	5	75	43	17	19	19	1.88
282008--282059	26	2.0	26	92	0	86	57	0	38	3	1.17
283008--283043	18	2.0	18	100	0	72	22	5	50	22	1.70
284722--284779	21	2.7	23	80	17	63	43	3	5	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284733--284954	27	8.3	27	80	11	239	40	10	1	47	1.48
284785--284949	14	11.9	14	76	16	141	39	11	0	48	1.44
284734--284913	52	3.5	52	86	6	226	41	10	1	47	1.47
284890--284944	17	3.4	17	69	23	55	38	10	1	49	1.49
284783--284954	52	3.1	54	88	8	208	40	11	0	47	1.44
284783--284954	85	2.1	79	90	6	263	40	11	0	47	1.44
287238--287303	32	2.1	31	84	15	84	56	15	0	28	1.40
287331--287381	25	2.0	27	88	7	79	1	37	0	60	1.08
287344--287395	15	3.5	15	89	2	79	0	38	0	61	0.96
287879--287962	32	2.7	31	85	3	98	17	34	26	21	1.96
289680--289742	31	2.0	31	100	0	126	31	19	33	15	1.93
290619--290689	34	2.1	34	86	2	99	22	29	15	32	1.95
291303--291342	21	1.9	21	85	10	55	50	7	10	32	1.64
292905--292955	15	3.4	15	100	0	102	5	41	0	52	1.25
293931--294001	34	2.1	33	86	2	97	22	29	15	32	1.95
294216--294255	21	1.9	22	90	10	66	12	10	40	37	1.77
295249--295282	15	2.2	16	89	5	52	26	14	26	32	1.95
299607--299649	21	2.0	21	81	0	50	27	30	25	16	1.97
300196--300516	103	3.1	103	96	0	597	25	12	24	37	1.91
300532--300595	23	2.8	23	71	4	67	21	25	25	28	1.99
306638--306680	21	2.0	21	81	0	50	27	30	25	16	1.97
306708--306745	20	1.9	20	94	0	67	23	31	31	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307224--307544	103	3.1	103	96	0	606	25	13	24	37	1.91
307561--307623	23	2.7	23	87	4	92	20	26	26	25	1.99
325140--325186	18	2.6	18	93	0	85	38	51	0	10	1.37
325140--325186	6	7.8	6	95	0	76	38	51	0	10	1.37
328423--328580	21	7.8	20	72	7	86	39	24	17	18	1.92
328547--328699	20	7.7	20	84	2	191	33	26	20	18	1.96
329082--329152	33	2.2	33	89	0	106	11	23	16	47	1.79
329232--329337	21	5.6	20	70	16	91	45	18	25	10	1.81
329230--329308	21	3.8	21	79	12	92	45	16	26	11	1.81
329225--329341	41	3.1	38	79	14	136	46	17	26	10	1.80
329295--329348	14	3.5	14	73	22	54	42	24	25	7	1.80
329284--329353	33	2.1	33	97	0	131	47	20	25	7	1.75
329290--329364	33	2.3	33	92	0	123	46	24	22	6	1.75
329360--329457	19	5.7	19	70	22	81	10	24	22	42	1.84
329382--329471	14	5.7	14	74	23	81	8	25	23	42	1.83
329365--329479	33	3.5	33	95	0	212	9	24	20	45	1.81
331178--331555	183	2.1	183	95	2	697	23	12	18	46	1.83
331178--331553	91	4.1	93	96	2	699	22	12	18	46	1.83
331597--331725	19	7.3	19	75	17	125	45	28	17	8	1.77
331633--331725	33	2.8	32	91	4	150	46	27	18	7	1.76
331597--331725	52	2.5	52	74	14	140	45	28	17	8	1.77
331721--331855	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331743--331799	14	3.7	14	77	20	60	10	21	22	45	1.82
331726--331818	33	2.8	33	95	0	168	10	20	21	47	1.80
333781--333816	14	2.6	14	95	0	63	33	0	22	44	1.53
333923--334020	19	5.4	19	84	13	143	45	17	22	14	1.84
333923--334039	53	2.2	53	98	1	227	44	17	23	13	1.85
336355--336379	12	2.1	12	100	0	50	0	28	0	72	0.86
336554--336600	24	2.0	24	87	8	69	38	21	14	25	1.92
337283--337512	20	11.5	20	86	1	237	20	17	25	37	1.94
337499--337581	21	4.0	21	73	6	78	25	16	24	33	1.96
337479--337577	42	2.4	43	77	11	100	21	18	23	37	1.94
346318--346343	2	13.0	2	100	0	52	50	0	0	50	1.00
357167--357220	23	2.3	24	90	3	83	44	1	7	46	1.42
357775--357809	18	2.0	17	88	5	52	45	28	17	8	1.77
361595--361633	20	2.0	20	100	0	78	51	2	0	46	1.14
361594--361723	9	15.4	9	64	23	52	50	2	1	46	1.23
361673--361745	6	13.3	6	71	25	56	50	1	0	47	1.09
361671--361779	15	7.0	16	75	14	88	47	0	1	49	1.18
361615--361877	31	8.6	30	70	21	140	48	2	3	45	1.33
361772--361818	24	1.9	25	82	4	60	55	4	2	38	1.31
361965--362043	36	2.2	36	93	0	131	44	8	3	43	1.53
362022--362072	15	3.3	15	71	15	50	50	3	3	41	1.39
362054--362095	22	2.0	21	90	9	68	50	9	4	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362083--362130	21	2.3	21	92	0	78	45	4	6	43	1.48
362220--362253	13	2.5	13	90	4	50	41	11	8	38	1.73
362246--362294	24	2.1	23	84	3	62	42	6	8	42	1.59
362284--362334	20	2.5	20	78	6	59	37	7	3	50	1.50
362535--362807	18	14.0	19	69	17	125	43	4	3	49	1.39
362535--362597	10	6.8	9	89	5	56	41	0	1	57	1.08
362561--362757	2	100.0	2	72	16	153	46	4	2	46	1.37
362785--362832	15	3.3	15	71	11	55	43	6	4	45	1.48
362879--362934	19	2.8	20	78	10	60	44	3	1	50	1.29
362913--362951	15	2.5	16	83	8	53	41	0	2	56	1.13
363050--363193	2	72.5	2	68	14	66	43	6	1	48	1.36
363049--363102	13	3.8	14	79	11	56	46	7	0	46	1.31
368876--368947	21	3.1	21	76	13	54	48	0	0	51	1.00
368895--368943	22	2.1	24	85	7	66	48	0	0	51	1.00
372163--372534	139	2.7	135	88	5	549	21	22	23	33	1.97
372667--372709	23	1.9	22	90	4	68	46	0	16	37	1.47
372664--372791	63	2.0	63	88	5	188	39	1	21	37	1.63
372857--372901	14	3.2	14	100	0	90	26	0	15	57	1.38
373590--373641	21	2.5	21	84	12	79	21	26	34	17	1.95
373614--373707	42	2.2	42	82	0	107	25	20	32	21	1.97
373634--373713	42	1.9	42	86	0	115	25	21	32	21	1.98
375315--375405	18	4.9	18	82	2	110	28	32	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377376--377409	18	1.9	17	88	5	50	64	5	0	29	1.17
385415--385473	18	3.0	20	70	9	59	25	25	23	25	2.00
385724--385751	2	14.0	2	100	0	56	50	0	0	50	1.00
387611--387706	30	3.3	30	73	11	74	58	1	0	40	1.05
388337--388400	3	21.3	3	100	0	128	34	0	0	65	0.93
390635--390683	25	2.0	25	84	8	64	42	8	14	34	1.75
405513--405593	28	2.9	27	76	9	74	54	2	2	40	1.27
409096--409127	14	2.3	14	100	0	64	56	0	6	37	1.25
411817--411849	17	1.9	17	88	11	50	69	6	0	24	1.10
420893--420985	21	4.5	21	75	4	91	40	17	24	17	1.90

Tables:   1   2   3   4   5   6   7