genome.fa.s9597.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009597.1 Hibiscus syriacus cultivar Beakdansim tig00116976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1557931

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836422--836460	2	19.5	2	100	0	78	51	0	0	48	1.00
836646--836696	2	25.5	2	100	0	102	50	0	0	49	1.00
838343--838380	20	1.9	19	89	5	58	57	5	2	34	1.35
853592--853766	24	7.4	24	88	3	248	48	33	18	0	1.49
853586--853749	3	54.7	3	91	0	130	46	33	19	0	1.50
853586--853766	21	8.2	21	84	7	200	47	33	18	0	1.49
860196--860234	19	2.2	18	86	9	53	58	7	2	30	1.39
862567--862611	17	2.6	17	75	0	54	42	0	0	57	0.98
868977--869057	2	40.5	2	97	0	153	1	48	0	50	1.08
882105--882131	2	13.5	2	100	0	54	51	0	48	0	1.00
886188--886215	10	2.8	10	100	0	56	32	10	21	35	1.88
893021--893409	208	1.9	207	82	4	496	30	23	11	33	1.91
895556--895591	18	2.0	18	100	0	72	50	5	22	22	1.70
901927--902249	163	2.0	162	96	3	607	36	20	11	32	1.88
906367--906991	314	2.0	311	96	2	1166	37	20	16	26	1.93
911713--911748	16	2.2	16	100	0	72	11	25	27	36	1.90
912538--912585	24	2.0	24	100	0	96	29	29	8	33	1.86
920352--920385	3	10.7	3	87	12	50	38	0	0	61	0.96
920493--920522	12	2.5	12	100	0	60	33	43	16	6	1.74
923840--923888	2	24.5	2	100	0	98	48	0	0	51	1.00
932484--932591	34	2.9	38	82	10	152	36	20	21	22	1.96
932480--932596	38	3.2	37	81	9	159	35	21	21	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932738--932845	42	2.6	42	79	1	119	24	20	23	32	1.98
932583--933024	215	2.1	213	91	1	715	32	15	19	32	1.93
933059--933129	22	3.3	21	69	15	65	25	18	21	35	1.95
933048--933135	42	2.1	42	93	0	149	26	19	20	34	1.96
934940--934968	2	14.5	2	100	0	58	48	0	0	51	1.00
936117--936157	2	21.5	2	90	9	68	48	0	0	51	1.00
940511--940583	24	3.0	24	77	0	83	52	16	9	21	1.72
940513--940621	48	2.3	48	82	9	125	48	15	13	22	1.80
957650--957727	37	2.2	36	93	4	131	14	11	37	37	1.82
957799--957887	37	2.6	32	80	16	106	11	11	37	40	1.77
957613--957925	156	2.1	150	88	8	465	22	12	31	33	1.92
971653--971685	18	1.9	18	88	11	52	54	30	15	0	1.41
972530--972554	2	12.5	2	100	0	50	52	0	0	48	1.00
972717--972816	24	4.2	24	71	5	85	46	17	14	23	1.83
975286--975376	13	6.3	13	73	22	67	16	20	46	16	1.84
975324--975376	13	3.8	13	81	13	70	13	20	49	16	1.79
975292--975380	18	5.3	17	79	19	98	14	20	48	16	1.81
975301--975376	29	2.5	31	89	8	122	14	19	48	17	1.81
979265--979348	43	2.0	42	83	2	105	33	9	19	38	1.84
979428--979463	7	5.1	7	87	12	56	13	16	11	58	1.63
979543--979580	20	1.9	20	88	0	58	21	18	10	50	1.76
981106--981150	22	2.0	22	83	8	56	40	4	6	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984307--984479	75	2.3	75	89	0	256	32	13	23	30	1.93
985803--985857	22	2.5	22	96	0	101	36	12	12	38	1.82
986532--987128	115	5.0	115	81	7	701	31	18	21	28	1.97
986532--987118	117	4.9	116	81	7	703	31	18	21	28	1.97
987273--987319	3	16.3	3	89	8	71	34	0	0	65	0.93
987705--987876	85	2.0	86	96	3	321	54	25	17	3	1.59
994883--994941	22	2.8	20	79	18	75	47	5	15	32	1.67
994692--994914	84	2.6	84	83	6	279	45	10	10	33	1.73
994864--994942	23	3.6	23	80	13	103	44	6	16	32	1.73
994970--995029	23	2.6	23	81	0	66	40	8	15	36	1.77
994903--995116	87	2.5	87	88	0	322	42	8	13	34	1.75
995066--995156	23	4.0	23	91	0	137	41	7	16	34	1.77
994970--995248	132	2.1	133	87	0	398	44	10	12	32	1.76
995189--995238	23	2.2	23	81	0	55	46	12	8	34	1.70
995205--995248	23	1.9	23	90	0	70	45	9	11	34	1.72
994864--995335	219	2.2	217	91	1	750	43	9	13	33	1.77
995121--995343	87	2.6	87	88	0	322	44	11	11	33	1.76
995276--995335	23	2.6	23	83	0	75	40	8	18	33	1.80
995911--996352	199	2.2	196	87	5	622	29	14	15	40	1.87
996402--996468	33	2.1	33	81	15	79	44	5	1	47	1.36
996416--996498	42	2.0	42	81	9	98	51	1	1	45	1.16
996414--996495	38	2.3	38	79	14	93	51	1	1	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996453--996547	30	3.2	31	76	11	92	49	1	2	47	1.20
996942--997003	32	1.9	32	90	0	97	33	17	11	37	1.86
998192--998228	13	2.8	13	91	0	56	40	0	27	32	1.57
999582--999643	24	2.7	23	85	7	81	17	25	27	29	1.98
1003811--1003840	2	15.0	2	100	0	60	50	0	0	50	1.00
1004962--1004995	15	2.3	15	90	10	52	67	5	0	26	1.13
1009921--1010041	60	2.0	61	82	4	147	30	5	6	57	1.48
1010114--1010266	60	2.6	60	83	3	157	39	3	22	33	1.72
1010155--1010286	60	2.2	60	86	2	176	42	3	20	33	1.70
1020129--1020467	168	2.0	168	89	10	532	23	12	20	43	1.86
1023030--1023097	30	2.2	31	89	5	102	45	17	19	17	1.86
1023039--1023099	30	2.0	31	96	3	115	40	16	19	22	1.90
1027855--1027918	32	2.0	32	93	3	112	43	3	15	37	1.63
1029263--1029391	64	2.0	64	100	0	258	38	27	12	20	1.89
1034337--1034370	17	2.0	17	100	0	68	41	23	5	29	1.78
1035917--1035952	2	18.0	2	100	0	72	50	0	0	50	1.00
1036886--1036931	23	2.0	23	82	4	56	13	2	21	63	1.40
1048257--1048288	5	6.4	5	100	0	64	21	18	40	18	1.91
1048560--1048623	32	2.0	32	82	11	78	42	1	0	56	1.09
1048672--1048718	22	2.1	22	96	0	85	21	4	23	51	1.65
1048963--1049125	79	2.1	79	94	0	281	50	13	12	23	1.75
1049117--1049142	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052122--1052156	18	2.1	16	89	10	52	77	2	17	2	1.02
1055134--1055186	2	27.0	2	96	3	99	50	0	0	49	1.00
1055133--1055191	6	8.6	7	90	9	63	52	0	0	47	1.00
1055592--1055649	27	2.2	26	81	9	64	63	3	8	24	1.38
1055671--1055705	17	2.1	17	88	0	52	54	2	8	34	1.46
1055934--1055979	22	2.2	21	88	7	67	71	4	6	17	1.24
1057588--1058264	106	6.4	106	92	1	1036	23	18	24	33	1.97
1068518--1068551	10	3.4	10	87	0	50	73	0	5	20	1.04
1069526--1069598	2	37.0	2	97	2	139	50	0	0	49	1.00
1070006--1070063	27	2.2	26	81	9	64	63	3	8	24	1.38
1070080--1070129	17	2.7	19	78	12	59	62	2	4	32	1.25
1070346--1070391	22	2.2	21	88	7	67	71	4	6	17	1.24
1071779--1071805	11	2.5	11	100	0	54	59	0	0	40	0.98
1079855--1079946	46	2.0	46	97	0	175	50	5	2	42	1.37
1085147--1085280	60	2.2	60	80	8	150	35	12	17	35	1.87
1090015--1090153	60	2.3	60	82	2	163	31	19	4	44	1.70
1090054--1090175	60	2.0	62	85	6	169	31	23	5	39	1.78
1091725--1091769	17	2.6	17	75	0	54	42	0	0	57	0.98
1100338--1100420	36	2.2	37	81	10	98	48	3	0	48	1.19
1111170--1111531	20	18.5	20	76	9	273	37	25	18	19	1.94
1111156--1111339	92	2.0	91	96	3	343	35	27	17	19	1.94
1112433--1112457	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114771--1114868	19	5.4	19	84	13	143	14	22	17	45	1.84
1114752--1114868	53	2.2	53	98	1	227	13	23	17	44	1.85
1114927--1115016	33	2.8	32	93	5	146	44	17	23	14	1.86
1114927--1115073	19	8.6	19	70	24	121	43	17	22	16	1.88
1114957--1115073	52	2.2	52	92	0	198	44	17	21	17	1.87
1115080--1115179	19	5.5	19	84	12	147	15	23	17	45	1.85
1115063--1115179	53	2.2	53	95	1	209	14	24	17	43	1.86
1117290--1117346	14	3.7	14	77	20	60	45	22	21	10	1.82
1117271--1117363	33	2.8	33	95	0	168	47	21	20	10	1.80
1117234--1117368	19	7.6	19	76	16	128	45	23	19	11	1.82

Tables:   1   2   3   4   5   6   7