genome.fa.s9597.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009597.1 Hibiscus syriacus cultivar Beakdansim tig00116976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1557931

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570597--570665	24	2.9	24	72	8	68	44	18	10	26	1.81
571375--571456	29	2.8	29	96	0	155	43	28	9	18	1.81
571457--571513	14	4.3	12	89	8	51	21	26	36	15	1.93
571456--571493	7	5.4	7	100	0	76	26	28	31	13	1.93
571491--571523	17	1.9	17	93	0	57	15	21	48	15	1.81
571538--571578	19	2.2	19	95	0	73	36	31	19	12	1.89
571538--571578	9	4.3	10	84	9	59	36	31	19	12	1.89
576682--576769	22	3.9	22	82	4	104	31	25	19	23	1.98
577392--577430	20	1.9	21	89	5	62	25	35	25	12	1.92
578281--578317	14	2.6	14	91	4	56	51	21	21	5	1.68
580438--580720	140	2.0	140	95	0	512	29	12	15	43	1.82
580691--580787	20	4.8	20	90	0	140	31	20	19	27	1.97
580826--580923	20	4.9	20	92	0	142	12	18	25	43	1.84
581043--581079	14	2.6	14	91	0	65	48	18	0	32	1.49
582455--582549	21	4.6	21	77	1	84	23	18	33	24	1.97
583066--583133	20	3.4	20	95	0	118	33	26	19	20	1.96
583126--583191	33	2.0	34	87	3	98	51	19	15	13	1.76
583195--583271	33	2.3	34	88	2	111	12	19	22	45	1.84
583263--583331	20	3.5	20	86	11	97	17	20	26	36	1.94
585241--585307	20	3.4	20	83	2	82	49	22	14	13	1.79
585690--585754	22	3.0	22	86	4	89	21	15	43	20	1.88
586019--586064	19	2.4	19	85	3	56	26	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586028--586066	19	2.1	19	90	0	60	25	15	25	33	1.95
586570--586598	2	14.5	2	100	0	58	48	0	0	51	1.00
592515--592603	30	3.0	30	81	4	101	33	4	1	60	1.24
592637--592690	26	2.1	26	100	0	108	44	3	3	48	1.38
618931--618957	2	13.5	2	100	0	54	48	0	0	51	1.00
618898--618940	19	2.3	19	100	0	86	34	4	18	41	1.71
626260--626299	2	20.0	2	100	0	80	50	0	0	50	1.00
627573--627601	14	2.0	15	93	6	51	48	6	0	44	1.29
627565--627615	26	2.0	26	84	7	68	49	5	0	45	1.26
649037--649074	19	2.0	19	89	0	58	44	13	13	28	1.81
649543--649589	21	2.2	21	80	0	58	17	42	29	10	1.82
657801--657830	15	2.0	15	93	0	51	66	0	3	30	1.07
659014--659060	3	15.7	3	91	8	78	31	0	0	68	0.90
659018--659060	17	2.6	17	96	3	79	32	0	0	67	0.91
659013--659060	20	2.5	19	93	6	87	31	0	0	68	0.90
666746--666944	105	1.9	106	84	3	267	30	19	9	41	1.83
666955--667060	36	3.0	35	81	9	124	33	16	10	39	1.83
667295--667390	29	3.6	27	71	23	96	27	13	12	46	1.79
667295--667393	51	2.0	50	88	6	146	26	13	12	48	1.77
667364--667487	66	1.9	66	83	6	162	28	15	11	45	1.80
667849--667933	29	2.9	29	94	1	143	29	12	12	44	1.80
668791--668843	21	2.5	21	84	0	70	20	26	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668833--668987	20	7.7	20	82	2	202	38	18	20	21	1.93
668836--668985	61	2.5	61	94	0	264	39	18	20	21	1.93
668833--668987	41	3.8	41	83	4	206	38	18	20	21	1.93
669219--669271	27	1.9	27	84	3	70	39	32	7	20	1.81
669539--669655	20	5.8	20	76	7	94	48	18	17	14	1.81
669627--669666	19	2.1	19	90	0	62	47	27	17	7	1.74
669662--669754	19	5.1	19	67	17	63	13	20	20	45	1.85
669662--669754	33	2.6	33	76	10	87	13	20	20	45	1.85
670166--670520	93	3.9	93	92	3	551	21	12	18	47	1.82
670166--670520	187	1.9	181	89	5	543	21	12	18	47	1.82
670611--670712	20	5.2	19	92	3	96	50	23	19	6	1.72
670637--670713	20	3.9	20	96	1	138	49	28	16	5	1.67
670617--670723	39	2.7	38	84	8	135	48	25	17	8	1.75
670719--670782	19	3.6	19	76	20	75	14	21	20	43	1.87
672676--672711	14	2.6	14	95	0	63	33	0	22	44	1.53
672907--673029	33	3.7	33	88	0	192	13	23	16	46	1.83
673018--673060	20	2.2	19	83	4	50	20	20	20	37	1.95
676475--676530	21	2.7	21	86	5	78	39	17	23	19	1.92
676702--676733	17	1.9	16	93	6	55	31	0	0	68	0.90
680449--680489	17	2.4	17	100	0	82	58	19	12	9	1.61
684133--684166	17	2.0	17	94	0	59	20	17	11	50	1.77
684202--684312	3	37.3	3	80	5	109	41	0	0	57	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684206--684302	35	2.8	35	93	3	162	43	1	0	55	1.06
684310--684348	2	19.5	2	100	0	78	48	0	0	51	1.00
684203--684350	35	4.1	34	84	11	149	43	0	0	55	1.04
685667--685922	138	1.8	139	84	4	347	36	8	7	47	1.63
688742--688785	14	3.2	13	84	12	52	18	15	9	56	1.65
688752--688785	7	4.9	7	86	13	52	14	17	11	55	1.68
692870--693441	115	5.0	115	93	0	939	32	14	21	31	1.93
694324--694499	75	2.3	75	81	6	187	31	15	21	31	1.94
695745--695821	22	3.5	22	90	0	127	33	11	11	42	1.78
696499--697364	76	11.4	76	97	0	1633	23	20	21	34	1.97
697510--697668	3	53.7	3	80	5	135	43	0	0	55	1.04
697524--697664	41	3.4	41	98	1	264	43	0	0	56	0.99
710868--710899	16	2.0	16	100	0	64	18	6	12	62	1.50
720164--720188	2	12.5	2	100	0	50	48	0	0	52	1.00
720329--720370	22	2.0	22	85	4	59	33	26	0	40	1.56
720815--720859	21	2.1	21	87	0	63	15	24	28	31	1.96
723792--723833	22	2.0	22	85	4	59	33	26	0	40	1.56
724278--724322	21	2.1	21	87	0	63	17	24	26	31	1.97
747960--748101	63	2.2	63	82	9	173	33	19	19	28	1.96
749058--749120	23	2.8	22	88	7	90	19	28	26	25	1.98
751407--751613	103	2.0	103	98	1	398	32	6	25	34	1.82
751711--751773	23	2.7	23	87	0	90	20	28	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756333--756362	15	2.0	15	93	0	51	23	33	10	33	1.88
761519--761549	13	2.4	13	94	0	53	29	3	25	41	1.71
770287--770357	23	3.1	23	72	17	58	52	2	1	43	1.24
777001--777033	3	11.0	3	100	0	66	0	0	33	66	0.92
778205--778235	2	15.5	2	100	0	62	48	0	0	51	1.00
778530--778631	4	25.5	4	89	0	141	48	4	1	45	1.35
778530--778631	14	7.4	14	85	4	127	48	4	1	45	1.35
778530--778631	10	10.2	10	88	0	141	48	4	1	45	1.35
781205--781247	22	2.0	22	85	0	59	13	13	9	62	1.53
792906--792947	21	2.0	20	86	4	57	38	14	7	40	1.73
792949--792991	20	2.1	21	91	4	70	37	11	11	39	1.78
796266--796298	2	16.5	2	100	0	66	51	0	0	48	1.00
798877--798918	2	21.0	2	100	0	84	50	0	0	50	1.00
806214--806240	2	13.5	2	100	0	54	51	0	0	48	1.00
818182--818222	8	5.2	8	82	5	57	34	0	29	36	1.58
818303--818781	128	3.7	128	96	0	850	21	24	21	32	1.98
819206--819278	28	2.6	28	84	2	103	39	1	2	56	1.22
819177--819277	34	3.2	33	78	16	122	39	2	3	53	1.35
819798--819906	42	2.6	42	92	0	182	23	24	33	18	1.97
819798--819912	21	5.5	21	83	8	153	22	25	33	18	1.96
819917--819963	21	2.2	21	85	7	60	23	12	40	23	1.89
821686--821767	19	4.6	19	67	21	52	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821693--821776	34	2.5	34	86	3	116	57	1	0	41	1.06
821721--821795	34	2.2	35	78	7	82	61	4	0	34	1.15
822889--822985	34	2.9	34	87	0	131	37	3	4	55	1.35
823512--823580	21	3.3	21	83	6	86	20	23	36	20	1.95
823584--823631	21	2.3	21	85	0	60	22	12	39	25	1.89
825356--825430	31	2.4	33	77	11	84	60	1	0	38	1.06
825353--825441	34	2.7	31	81	6	97	59	2	0	38	1.10
829809--829855	2	23.5	2	100	0	94	48	0	0	51	1.00
832607--832706	49	2.1	48	84	1	128	19	38	28	15	1.91
833130--833165	18	1.9	18	88	5	54	50	0	11	38	1.38

Tables:   1   2   3   4   5   6   7