genome.fa.s9597.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009597.1 Hibiscus syriacus cultivar Beakdansim tig00116976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1557931

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377274--1377385	21	5.3	21	77	4	109	21	36	15	26	1.93
1378987--1379027	12	3.4	12	93	0	64	17	2	26	53	1.56
1381478--1381511	12	2.8	12	90	0	50	14	0	29	55	1.40
1383294--1383325	2	16.0	2	100	0	64	50	0	0	50	1.00
1383564--1383603	19	2.1	19	86	9	55	25	22	10	42	1.84
1384903--1385048	20	7.2	20	70	11	82	29	15	24	30	1.96
1384863--1385091	40	5.7	40	75	8	117	33	13	23	29	1.93
1384903--1385091	41	4.7	40	75	6	132	32	14	23	29	1.94
1384862--1385098	81	2.9	80	75	6	219	32	13	24	29	1.93
1384960--1385117	20	7.8	20	73	6	70	30	11	27	31	1.91
1389318--1389350	11	2.7	13	86	13	52	33	0	0	66	0.92
1397583--1397633	12	4.3	12	76	18	54	31	0	1	66	1.03
1397614--1397811	13	15.5	12	68	22	75	43	0	0	55	1.03
1397590--1397814	63	3.5	64	92	4	355	42	0	0	56	1.05
1397710--1397793	38	2.2	38	83	14	102	45	0	0	54	0.99
1397809--1397858	19	2.8	18	85	11	59	38	2	0	60	1.09
1397594--1397859	127	2.1	123	83	13	339	41	0	0	57	1.07
1397824--1397876	19	2.7	19	76	21	56	33	0	1	64	1.05
1397591--1397814	127	1.8	125	90	6	350	42	0	0	56	1.05
1398332--1398391	31	1.9	31	90	6	95	43	8	6	41	1.61
1401274--1401303	15	2.1	15	93	6	53	6	3	26	63	1.35
1412012--1412279	138	1.9	138	97	0	509	39	19	17	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416994--1417091	41	2.4	41	96	0	178	24	12	12	51	1.73
1418434--1418489	21	2.8	20	86	10	78	50	8	17	23	1.74
1419216--1419271	21	2.8	20	94	2	94	25	30	21	23	1.99
1419219--1419271	20	2.6	21	93	3	90	26	32	20	20	1.98
1420652--1420740	13	6.3	13	81	14	97	17	42	22	16	1.89
1420652--1420725	31	2.6	29	85	10	100	18	44	21	14	1.86
1420682--1420716	18	1.9	18	94	0	61	22	42	22	11	1.85
1420648--1420740	44	2.1	45	87	4	134	18	44	21	16	1.87
1422052--1422087	18	2.0	18	88	0	54	52	0	16	30	1.44
1423215--1423321	24	4.5	24	74	4	90	22	13	16	47	1.81
1425476--1425510	18	1.9	18	94	0	61	22	42	22	11	1.85
1425446--1425534	13	6.3	13	81	14	88	17	42	21	17	1.89
1426847--1426882	18	2.0	18	88	0	54	52	0	16	30	1.44
1428009--1428115	24	4.5	24	74	4	90	22	13	16	47	1.81
1430245--1430332	13	6.3	13	79	17	88	18	43	21	17	1.88
1430241--1430326	18	4.3	18	70	24	57	18	45	20	15	1.85
1430279--1430326	18	2.6	17	84	12	60	18	41	22	16	1.90
1431640--1431675	18	2.0	18	88	0	54	52	0	16	30	1.44
1432794--1432900	24	4.5	24	74	4	90	22	13	16	47	1.81
1433745--1433796	20	2.6	20	96	0	95	19	26	25	28	1.98
1434944--1434976	15	2.1	16	94	5	59	36	0	0	63	0.95
1436606--1436782	60	2.9	60	80	14	154	32	20	4	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1438036--1438069	17	1.9	18	88	5	52	29	0	5	64	1.17
1438041--1438113	16	3.6	21	75	21	75	27	0	5	67	1.13
1438069--1438111	16	2.7	16	96	0	77	23	0	4	72	1.04
1438044--1438385	115	3.0	114	96	3	620	28	4	9	57	1.52
1438184--1438225	15	2.7	15	88	3	57	26	0	2	71	0.98
1438192--1438237	20	2.2	21	84	3	58	28	0	2	69	1.00
1438200--1438243	21	2.2	20	87	4	61	27	0	0	72	0.85
1438299--1438340	15	2.7	15	88	3	57	26	0	2	71	0.98
1441802--1441850	6	8.2	6	95	0	89	51	34	0	14	1.43
1441851--1441898	6	8.0	6	85	0	60	33	4	16	45	1.67
1446441--1446495	24	2.3	24	100	0	110	25	20	23	30	1.98
1452776--1452811	18	1.9	19	88	5	56	52	2	0	44	1.15
1463163--1463205	21	1.9	24	86	13	65	51	0	25	23	1.49
1467837--1467870	17	2.0	17	100	0	68	17	11	17	52	1.73
1474140--1474230	27	3.4	27	92	0	137	36	14	19	29	1.91
1477108--1477176	34	2.0	34	100	0	138	43	11	11	33	1.77
1481740--1481814	35	2.1	35	92	0	123	33	29	28	9	1.88
1481892--1481981	23	3.8	23	82	4	108	37	20	16	25	1.93
1484463--1484508	18	2.6	18	100	0	92	8	21	52	17	1.71
1484442--1484486	13	3.3	13	90	6	63	17	22	42	17	1.89
1486520--1486594	35	2.1	35	92	0	123	33	29	28	9	1.88
1486672--1486761	23	3.8	23	82	4	108	37	20	16	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1489239--1489284	18	2.6	18	100	0	92	8	21	52	17	1.71
1489218--1489262	13	3.3	13	90	6	63	17	22	42	17	1.89
1490815--1490875	15	3.9	16	72	10	54	47	0	0	52	1.00
1490911--1490939	6	4.8	6	100	0	58	0	65	17	17	1.27
1490927--1491003	30	2.6	30	89	0	127	20	37	10	31	1.87
1491609--1491659	20	2.5	20	96	0	93	47	11	21	19	1.81
1492295--1492320	2	13.0	2	100	0	52	50	0	0	50	1.00
1515392--1515433	9	4.7	9	82	8	50	54	4	0	40	1.21
1515392--1515433	19	2.2	19	86	0	57	54	4	0	40	1.21
1515974--1516356	65	5.9	65	93	0	626	19	18	26	34	1.95
1526932--1526963	4	8.0	4	100	0	64	75	0	0	25	0.81
1527374--1527399	13	2.0	13	100	0	52	53	15	23	7	1.67
1529370--1529411	9	4.7	9	82	8	50	54	4	0	40	1.21
1529370--1529411	19	2.2	19	86	0	57	54	4	0	40	1.21
1533922--1534002	21	3.9	22	81	14	100	18	38	27	16	1.92
1534267--1534315	21	2.3	21	92	0	89	24	22	14	38	1.91
1541538--1541588	21	2.4	22	83	6	70	21	25	31	21	1.98

Tables:   1   2   3   4   5   6   7

The End!