genome.fa.s9603.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009603.1 Hibiscus syriacus cultivar Beakdansim tig00116983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1462390

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187078--187149	8	8.8	8	85	8	92	84	0	15	0	0.62
187078--187149	17	4.4	16	85	11	92	84	0	15	0	0.62
187076--187156	26	3.1	25	82	7	99	82	0	17	0	0.66
187076--187154	28	2.9	28	88	7	110	83	0	16	0	0.65
187080--187154	9	8.3	9	88	8	100	85	0	14	0	0.60
188531--188775	50	4.8	50	84	2	274	38	17	19	24	1.93
190362--190443	42	2.0	42	92	0	137	20	20	21	36	1.95
190607--190692	42	2.0	44	86	4	122	24	18	19	37	1.94
190277--190880	249	2.4	249	90	1	962	31	16	16	35	1.91
191132--191193	3	21.7	3	79	15	69	35	3	0	61	1.12
191130--191194	17	4.0	17	81	16	84	35	4	0	60	1.18
193414--193460	20	2.3	20	85	0	67	63	0	8	27	1.23
202105--202142	17	2.2	17	100	0	76	39	28	5	26	1.78
202258--202316	18	3.3	18	84	13	77	77	6	5	10	1.10
210634--210697	24	2.9	21	72	17	58	28	18	21	31	1.97
210595--210697	45	2.3	44	84	14	124	27	21	23	28	1.99
216513--216664	45	3.4	45	89	3	225	33	14	21	30	1.93
216605--216824	63	3.5	63	86	7	327	30	15	22	31	1.95
216829--216866	20	1.9	20	88	0	58	23	21	26	28	1.99
221894--221935	22	1.9	22	85	0	57	21	16	33	28	1.95
225690--225736	25	1.9	24	83	12	60	70	4	2	23	1.16
231603--231638	13	2.8	12	88	12	54	75	0	11	13	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235353--235439	43	2.0	43	93	0	147	22	17	22	36	1.94
243283--243333	15	3.3	15	70	20	50	45	11	13	29	1.79
245526--245555	2	15.0	2	100	0	60	50	0	0	50	1.00
246666--246827	64	2.5	63	81	5	182	24	24	17	32	1.97
250212--250276	23	2.8	23	85	0	94	30	26	26	16	1.97
250671--250706	2	18.0	2	94	0	63	50	0	2	47	1.15
250769--250799	2	15.5	2	100	0	62	48	0	0	51	1.00
251486--251524	20	2.0	20	85	5	53	30	12	2	53	1.52
251917--252078	64	2.5	63	83	5	200	24	24	19	32	1.98
256169--256254	3	27.7	3	83	6	100	37	1	0	61	1.04
257729--257771	23	1.9	23	86	13	63	30	0	4	65	1.13
257789--257833	2	24.0	2	78	13	51	55	0	0	44	0.99
257796--257835	19	2.1	19	86	9	55	52	0	0	47	1.00
257894--258256	138	2.6	138	95	1	640	36	7	8	46	1.63
263779--263814	8	4.6	8	89	6	56	75	0	25	0	0.81
263779--263814	15	2.3	16	95	4	65	75	0	25	0	0.81
268684--268790	45	2.3	45	83	3	133	23	27	19	29	1.98
268805--268911	44	2.4	45	85	6	144	22	25	23	28	1.99
268625--269457	121	6.9	121	94	0	1420	23	22	20	32	1.98
268924--269021	44	2.2	45	83	5	128	24	22	20	32	1.98
269045--269142	45	2.2	45	90	0	151	24	24	19	31	1.98
268625--269457	241	3.5	241	93	1	1427	23	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269166--269273	45	2.4	45	85	6	137	23	25	21	30	1.99
269287--269393	45	2.4	45	84	4	135	23	22	22	31	1.98
269565--269641	3	24.7	3	79	7	73	38	1	0	59	1.06
271116--271160	22	2.1	22	88	12	67	28	0	4	66	1.11
271525--271568	23	1.9	23	90	0	70	50	0	0	50	1.00
272212--272260	23	2.2	23	92	3	82	55	10	14	20	1.68
273207--273254	23	2.0	24	88	11	73	54	0	4	41	1.20
274774--274803	2	15.0	2	100	0	60	50	0	0	50	1.00
280080--280159	18	4.2	19	84	10	110	30	33	18	17	1.94
280078--280156	39	2.0	39	95	0	140	30	30	20	18	1.97
288502--288806	44	6.9	44	80	4	312	31	21	25	20	1.98
288502--288806	132	2.3	131	84	4	382	31	21	25	20	1.98
292120--292173	19	2.7	20	85	5	74	20	40	20	18	1.91
292346--292399	19	2.7	20	82	5	65	22	40	18	18	1.91
292084--292535	226	2.0	226	96	0	841	28	25	17	28	1.97
293866--293918	23	2.3	23	96	0	97	54	1	11	32	1.47
294530--294716	44	4.3	44	86	2	180	33	22	24	19	1.97
294530--294716	88	2.1	87	82	4	225	33	22	24	19	1.97
295720--295771	27	2.0	26	85	11	70	19	9	21	50	1.76
300785--300831	14	3.4	13	81	16	51	29	12	0	57	1.36
300785--300827	16	2.9	15	86	6	52	32	11	0	55	1.36
300908--300938	4	7.8	4	100	0	62	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301160--301242	23	3.7	23	83	3	87	31	24	24	20	1.98
301175--301238	22	2.8	23	88	4	94	32	20	25	21	1.97
305130--305164	2	17.5	2	93	0	61	54	0	0	45	0.99
305568--305672	37	2.8	37	86	0	138	30	14	13	41	1.84
306215--306845	105	6.0	105	88	2	815	22	17	25	33	1.96
307045--307119	35	2.1	36	87	2	107	40	16	21	22	1.91
307135--307519	39	10.9	39	60	22	116	37	12	20	28	1.90
307020--307704	207	3.4	208	92	4	1111	36	12	20	29	1.90
307020--307704	312	2.2	312	92	4	1127	36	12	20	29	1.90
307020--307649	105	6.1	104	95	2	1101	37	12	20	30	1.89
307774--307881	36	3.0	36	73	2	101	44	12	14	27	1.82
307739--307878	72	1.9	75	85	8	198	41	12	17	27	1.86
307735--307896	72	2.2	74	82	8	197	40	12	18	28	1.87
309026--309563	184	2.9	183	93	1	900	30	20	20	28	1.97
313045--313081	19	1.9	19	89	10	58	67	0	24	8	1.17
313712--313791	39	2.1	39	97	0	151	45	17	2	35	1.62
314517--314549	2	16.5	2	93	0	57	54	0	0	45	0.99
314954--315055	37	2.8	37	84	0	123	30	13	13	42	1.83
316444--316480	18	2.1	18	94	0	65	64	0	0	35	0.94
317550--317602	22	2.5	22	96	3	99	39	20	9	30	1.84
319165--319199	15	2.3	15	100	0	70	48	0	14	37	1.44
320162--320210	23	2.2	23	89	7	75	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320260--320345	33	2.6	33	86	0	118	40	17	11	30	1.85
320817--320867	7	6.9	7	79	20	59	27	0	0	72	0.85
320821--320864	16	2.8	16	96	3	81	25	0	0	75	0.81
324589--324843	109	2.4	110	84	3	331	34	23	17	23	1.96
324812--325273	254	1.8	252	83	3	606	32	23	17	26	1.97
325248--325336	32	2.7	34	79	13	105	31	29	17	21	1.96
325819--325864	3	16.3	3	79	20	55	30	0	0	69	0.89
325918--325999	33	2.5	33	88	4	112	35	19	14	30	1.92
326471--326520	7	6.9	7	86	13	66	28	0	0	72	0.86
326472--326517	4	12.2	4	82	17	55	26	0	0	73	0.83
326471--326526	19	3.0	19	85	14	73	26	1	0	71	0.96
326471--326525	15	3.7	15	80	17	62	27	1	0	70	0.97
327019--327076	27	2.2	26	78	9	62	37	15	12	34	1.85
331380--331406	13	2.1	13	100	0	54	62	0	7	29	1.22
334226--334317	32	2.9	32	83	3	123	42	19	9	28	1.83
342138--342167	15	2.0	15	100	0	60	33	20	6	40	1.78
350769--350941	20	8.6	20	86	8	203	35	17	20	27	1.95
350760--350941	40	4.5	41	85	7	232	34	17	20	28	1.95
350760--350941	81	2.3	81	84	9	239	34	17	20	28	1.95
354375--354433	19	3.4	19	68	22	65	47	16	20	15	1.83
354375--354468	33	2.8	33	85	3	109	47	20	18	13	1.82
354483--354609	33	3.8	33	90	0	191	12	23	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354518--354577	19	3.4	19	67	21	58	15	21	18	45	1.86
354912--354952	20	2.0	20	95	0	73	12	14	17	56	1.68
354916--354959	20	2.2	20	87	0	61	13	13	18	54	1.71
357450--357521	21	3.5	21	76	16	78	69	0	0	30	0.89
357451--357521	22	3.1	23	70	25	69	69	0	0	30	0.89
357458--357550	15	6.5	15	68	17	56	69	0	3	26	1.03
357590--357632	18	2.4	18	88	0	59	69	0	9	20	1.15
358240--358437	76	2.6	76	91	1	301	59	10	1	29	1.36
361694--361722	6	4.8	6	100	0	58	0	82	0	17	0.66
362150--362257	53	2.0	53	100	0	216	30	12	5	50	1.63

Tables:   1   2   3   4   5   6   7