genome.fa.s9603.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009603.1 Hibiscus syriacus cultivar Beakdansim tig00116983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1462390

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622738--622857	43	2.8	43	82	9	122	38	0	11	50	1.39
622736--622857	42	2.9	40	81	12	122	37	0	11	50	1.39
624661--624719	26	2.3	24	78	16	64	40	3	8	47	1.51
625438--625529	46	2.1	43	86	10	123	47	7	1	43	1.39
625535--625578	21	2.1	21	86	0	61	52	15	0	31	1.44
625904--625950	13	3.4	13	74	25	51	31	25	23	19	1.98
625890--625950	29	2.0	31	90	9	99	31	22	24	21	1.98
626021--626158	49	2.8	51	90	8	223	18	54	7	19	1.68
626096--626123	13	2.2	13	100	0	56	14	57	7	21	1.61
626088--626217	16	8.2	16	72	14	99	16	53	7	22	1.67
626021--626156	46	2.8	47	92	6	193	17	54	8	19	1.68
626047--626223	82	2.2	81	81	7	207	17	53	7	21	1.69
626109--626235	65	1.9	65	93	4	220	16	50	9	23	1.74
626198--626286	44	2.0	45	97	2	171	15	41	15	26	1.88
626268--626321	18	3.1	18	97	2	101	16	20	24	38	1.92
626336--626424	29	3.1	29	100	0	178	17	37	31	13	1.89
628664--628694	2	15.5	2	100	0	62	48	0	0	51	1.00
628923--629082	50	3.2	49	86	2	212	30	13	11	43	1.80
630626--630661	2	18.0	2	94	0	63	47	0	0	52	1.00
631718--631771	21	2.6	21	100	0	108	14	46	24	14	1.83
637888--637936	24	2.0	24	84	7	64	57	2	4	36	1.30
649005--649054	3	16.3	3	80	19	59	38	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649005--649057	19	2.7	19	86	13	72	37	0	0	62	0.96
652260--652336	32	2.4	32	88	0	109	22	15	5	57	1.58
652861--652917	15	4.1	14	80	15	73	17	19	14	49	1.80
652860--652917	21	2.8	21	76	15	66	17	18	13	50	1.79
652863--652923	27	2.3	27	94	0	104	18	19	14	47	1.82
655216--655303	32	2.8	32	75	16	92	27	14	23	34	1.94
655547--655866	124	2.6	124	90	1	498	29	25	18	27	1.98
655838--656158	129	2.5	128	82	2	401	26	29	16	27	1.97
663241--663290	21	2.3	22	86	3	66	24	28	22	26	1.99
663824--663915	31	3.0	31	83	3	105	38	20	17	23	1.93
668918--668963	16	3.1	15	84	6	58	6	28	0	65	1.17
668926--668956	14	2.1	14	94	5	53	6	29	0	64	1.18
669623--669733	32	3.5	32	78	1	107	36	11	18	34	1.87
675856--675972	21	5.6	21	97	0	216	37	9	23	29	1.86
677577--677641	31	2.1	31	97	0	121	26	20	24	29	1.99
683410--683455	20	2.3	19	85	14	58	26	15	8	50	1.73
694892--695031	31	4.5	31	92	0	226	27	18	24	30	1.98
695037--695074	19	2.0	19	94	0	67	31	15	23	28	1.96
701118--701166	21	2.3	21	80	10	64	44	6	0	48	1.27
704184--704234	27	1.9	27	88	11	79	43	5	1	49	1.38
704199--704257	30	1.9	30	82	6	73	38	6	1	52	1.38
704234--704281	20	2.3	21	82	10	55	39	4	4	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709895--709935	18	2.3	18	91	4	66	63	2	4	29	1.28
721272--721305	13	2.5	13	85	4	50	23	26	17	32	1.97
730459--730496	17	2.2	18	95	4	69	23	18	23	34	1.96
730502--730535	17	2.1	16	94	5	59	67	2	5	23	1.26
732529--732554	12	2.2	12	100	0	52	7	7	7	76	1.15
733313--733385	22	3.2	22	75	17	60	46	12	10	30	1.76
733340--733398	25	2.3	26	94	5	104	47	15	13	23	1.81
733377--733414	18	2.1	18	95	0	67	47	13	10	28	1.76
742098--742183	25	3.6	25	76	12	90	50	10	9	30	1.68
742652--742720	3	23.0	3	96	0	129	66	1	0	31	1.00
744420--744679	66	3.9	66	84	1	313	37	11	18	31	1.87
744474--744641	30	5.2	30	62	16	75	36	11	18	32	1.87
744485--744669	36	5.4	36	67	20	121	37	11	18	31	1.87
744420--744675	132	1.9	133	85	3	354	37	11	19	32	1.87
746783--746839	10	5.4	10	77	22	55	1	19	0	78	0.83
746781--746830	15	3.1	15	78	15	64	0	20	0	80	0.72
746781--746836	18	3.2	18	81	18	66	1	17	0	80	0.80
752715--752789	36	2.1	36	97	2	143	41	22	13	22	1.89
754035--754090	24	2.3	24	75	0	58	17	33	19	28	1.95
755741--755789	25	1.9	25	83	4	62	46	0	2	51	1.12
755813--755852	20	1.9	21	85	10	55	35	2	2	60	1.24
761671--761858	92	2.0	93	97	1	360	36	21	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765166--765232	26	2.6	26	97	0	125	47	0	8	43	1.34
773906--773978	18	3.9	18	82	7	101	20	19	31	28	1.97
773900--773974	38	2.0	38	94	0	132	21	18	29	30	1.97
779072--779135	29	2.3	27	85	12	85	28	12	14	45	1.81
779079--779135	29	2.0	29	100	0	114	24	14	14	47	1.80
783601--783658	29	2.0	29	96	0	107	24	12	13	50	1.76
790357--790388	12	2.7	12	90	0	55	18	31	9	40	1.83
791649--791911	26	11.0	26	73	18	241	20	20	11	47	1.81
791649--791931	46	6.0	46	91	2	404	21	20	10	46	1.81
791649--791989	138	2.4	141	83	9	423	21	20	10	47	1.80
791938--791989	26	2.0	26	96	0	95	21	17	11	50	1.77
791688--791989	92	3.3	89	87	5	358	21	20	10	46	1.81
792417--792616	95	2.1	95	88	1	303	25	24	16	34	1.96
794712--794778	33	2.0	33	94	0	116	29	14	23	31	1.95
794721--794775	17	3.3	17	73	14	51	30	16	21	30	1.95
794838--794878	20	2.0	20	95	0	73	17	4	24	53	1.63
795318--795408	30	3.0	30	91	0	146	26	16	24	32	1.96
796718--796750	15	2.1	16	88	5	50	21	0	21	57	1.41
802651--802680	5	6.0	5	92	0	51	76	0	3	20	0.92
809971--810009	20	2.0	20	89	0	60	33	23	10	33	1.88
810318--810361	22	2.0	22	86	0	61	52	0	0	47	1.00
820962--821547	288	2.0	287	97	2	1104	26	12	24	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821636--821678	21	2.0	21	100	0	86	53	18	9	18	1.70
830008--830103	48	2.0	47	97	2	183	26	4	27	42	1.73
831243--831349	2	56.5	2	72	20	88	42	0	1	54	1.17
831231--831350	5	24.4	5	78	13	99	40	0	2	55	1.19
831231--831350	60	2.0	62	88	6	183	40	0	2	55	1.19
833212--833277	17	3.8	17	78	6	69	12	6	3	78	1.04
835663--835771	2	57.0	2	72	18	81	40	0	3	55	1.17
835679--835771	18	5.3	18	81	13	106	39	0	4	55	1.19
835663--835783	52	2.3	55	85	9	162	37	0	4	58	1.17
836267--836318	27	2.0	25	85	7	68	61	19	11	7	1.53
837012--837088	40	1.9	39	86	2	109	24	10	0	64	1.24
838280--838325	20	2.3	19	85	14	58	50	8	15	26	1.73
840430--840974	270	2.0	269	97	1	1027	37	20	13	28	1.91
842190--843089	450	2.0	448	94	4	1591	24	20	19	36	1.95
843819--843926	53	2.0	53	100	0	216	27	25	20	26	1.99
848553--848598	20	2.3	19	85	14	58	50	8	15	26	1.73
851946--852055	56	2.0	54	96	3	202	37	16	26	20	1.93
856275--856355	23	3.6	22	81	5	99	30	23	27	18	1.98
858451--858575	47	2.8	46	83	7	150	30	22	8	39	1.83
858698--858750	27	2.0	27	100	0	106	30	26	15	28	1.96
864191--864568	188	2.0	187	92	7	642	31	21	8	37	1.84
865602--865727	47	2.8	45	81	10	139	30	19	7	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868233--868278	18	2.6	17	93	6	74	21	26	19	32	1.97
872381--872509	2	67.5	2	74	22	109	44	1	3	51	1.26
872398--872507	38	2.9	38	77	14	127	44	1	2	50	1.26
873011--873084	25	3.0	25	91	0	112	66	16	13	4	1.40
873027--873073	15	3.5	15	67	27	50	61	21	14	2	1.43
876951--877070	43	2.7	43	84	2	123	30	20	25	25	1.99
876969--877237	43	6.3	43	89	1	360	27	21	23	27	1.99
876994--877285	43	6.8	43	85	3	295	27	20	23	28	1.99
876990--877285	129	2.3	130	84	5	386	27	20	23	28	1.99
876969--877286	86	3.7	86	83	3	336	28	21	23	27	1.99

Tables:   1   2   3   4   5   6   7