genome.fa.s9603.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009603.1 Hibiscus syriacus cultivar Beakdansim tig00116983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1462390

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362665--362726	15	4.1	16	68	15	51	48	20	0	30	1.50
363675--363712	18	2.1	18	90	0	58	34	18	10	36	1.85
363793--363918	37	3.4	37	83	2	146	49	8	2	39	1.47
366329--366365	15	2.5	15	91	8	58	45	5	2	45	1.40
377684--377711	8	3.5	8	100	0	56	39	0	10	50	1.37
382168--382839	55	12.2	55	88	2	920	32	13	24	29	1.94
383929--383965	19	1.9	19	94	0	65	81	8	5	5	0.99
386037--386210	37	4.7	38	80	3	192	48	6	1	43	1.40
386036--386194	75	2.1	74	79	3	176	48	6	2	42	1.42
386036--386215	75	2.4	74	77	6	175	47	6	2	43	1.44
386686--386976	153	1.9	153	90	0	465	38	9	16	35	1.81
393910--393947	15	2.6	15	84	15	53	26	18	2	52	1.58
394529--394567	2	19.5	2	100	0	78	51	0	0	48	1.00
397519--397592	19	3.8	19	77	10	62	39	13	17	29	1.88
397539--397590	19	2.7	19	85	5	70	38	15	17	28	1.90
399429--399467	21	1.9	20	84	5	51	35	20	15	28	1.93
407860--407935	3	24.7	3	84	15	102	31	0	0	68	0.90
407860--407935	29	2.6	30	90	10	115	31	0	0	68	0.90
418249--418279	9	3.6	9	91	8	55	22	22	0	54	1.44
418249--418288	17	2.4	17	87	8	55	25	17	0	57	1.40
421789--421874	5	17.2	5	73	21	74	80	0	16	3	0.85
421789--421862	26	2.8	26	89	6	105	81	0	16	2	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421789--421888	38	2.6	39	80	13	111	77	0	17	6	0.97
421788--421874	27	3.3	26	83	15	99	80	0	16	3	0.84
422236--422274	18	2.2	18	100	0	78	30	5	5	58	1.41
423545--424332	123	6.4	123	93	1	1271	39	14	20	25	1.91
423545--424327	368	2.1	368	92	1	1313	39	14	20	25	1.91
423931--423994	20	3.2	20	65	12	60	43	9	23	23	1.82
424573--424657	3	27.7	3	83	9	109	35	1	0	63	1.02
425991--426040	17	2.8	18	79	14	59	44	0	2	54	1.11
426003--426032	16	1.9	16	93	6	53	36	0	0	63	0.95
429823--429992	37	4.8	37	68	20	121	32	18	7	41	1.79
429935--430013	37	2.1	37	85	0	104	31	22	7	37	1.82
430056--430138	36	2.3	35	79	6	94	27	19	14	38	1.90
430074--430149	36	2.1	36	90	0	116	28	23	10	36	1.88
430141--430326	76	2.4	76	84	5	225	32	19	8	39	1.82
430396--430586	52	3.7	52	82	8	219	31	10	18	39	1.85
431369--432012	140	4.6	139	88	2	979	36	17	20	24	1.94
431369--432012	279	2.3	279	93	0	1101	36	17	20	24	1.94
433572--433625	25	2.2	25	89	0	81	31	7	5	55	1.51
436680--436713	17	1.9	18	88	5	52	41	0	0	58	0.98
437352--437386	18	2.1	18	89	10	56	34	5	5	54	1.48
438369--438414	24	1.9	24	95	0	83	50	19	21	8	1.75
438888--438967	2	40.0	2	100	0	160	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440579--440616	7	5.6	7	90	9	53	0	15	0	84	0.63
440585--440614	6	4.8	6	95	4	51	0	13	0	86	0.57
440991--441029	2	19.5	2	100	0	78	51	0	0	48	1.00
446480--446520	12	3.1	14	76	20	52	56	4	0	39	1.21
446657--446757	7	14.7	7	75	8	55	39	36	0	22	1.61
446832--446915	7	12.1	7	75	1	53	41	32	2	23	1.67
446832--446896	28	2.4	28	82	7	71	44	30	1	23	1.62
446832--446915	21	4.0	21	73	1	71	41	32	2	23	1.67
446989--447076	14	6.4	14	70	10	56	46	29	0	23	1.53
446735--447029	158	1.9	158	87	2	439	44	20	6	28	1.75
449075--449158	33	2.7	30	77	12	87	27	14	17	40	1.88
449226--449298	37	2.0	36	86	2	101	23	8	13	54	1.65
449507--449539	17	1.9	17	93	0	57	30	18	21	30	1.97
449522--449566	23	1.9	24	90	4	74	33	22	17	26	1.96
449616--449676	31	2.0	31	90	0	95	21	14	21	42	1.88
453109--453817	55	13.1	55	84	2	850	33	18	20	27	1.96
453109--453817	164	4.4	164	87	2	972	33	18	20	27	1.96
453109--453826	109	6.6	108	85	3	863	33	18	20	27	1.96
453964--454213	81	3.1	81	86	2	367	39	12	22	26	1.89
454931--454984	27	2.0	27	100	0	108	33	11	22	33	1.89
458876--459485	109	5.6	110	83	3	695	33	17	20	28	1.96
458876--459488	164	3.8	163	84	3	763	33	17	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458876--459487	55	11.3	55	83	3	674	33	17	20	28	1.96
459626--459875	81	3.1	81	91	0	401	38	12	22	26	1.89
460045--460158	2	57.5	2	92	1	194	47	0	0	52	1.00
463907--463932	6	4.3	6	100	0	52	53	0	46	0	1.00
465850--465898	19	2.6	19	93	0	80	30	6	16	46	1.71
491621--491660	20	2.0	20	85	9	55	42	27	20	10	1.83
491714--491779	25	2.7	25	92	2	107	10	16	36	36	1.84
494036--494071	16	2.2	17	90	5	56	50	2	0	47	1.15
508463--508750	43	6.7	43	77	8	257	32	18	21	28	1.96
508463--508750	86	3.4	83	78	4	299	32	18	21	28	1.96
511497--511776	83	3.4	80	77	8	258	31	18	17	32	1.94
512290--512352	23	2.6	23	73	16	56	69	0	1	28	0.97
515172--515202	10	2.9	11	90	9	55	74	6	9	9	1.23
518248--518489	40	6.1	40	89	1	326	26	16	23	33	1.96
518594--518719	47	2.8	45	86	5	173	39	7	22	30	1.81
525236--525316	3	27.0	3	85	5	101	60	1	0	38	1.05
525471--526450	76	13.0	76	92	3	1617	34	20	22	23	1.97
526248--526459	66	3.1	65	77	16	246	35	18	21	24	1.95
526172--526459	142	2.0	141	95	0	522	35	18	21	23	1.96
529763--530092	92	3.6	92	93	2	556	36	22	13	27	1.92
539256--539334	3	26.0	3	87	2	104	60	1	0	37	1.05
539247--539334	15	5.2	16	81	13	81	59	1	0	39	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544255--544279	2	12.5	2	100	0	50	52	0	0	48	1.00
544451--544496	13	3.5	13	90	0	74	34	15	19	30	1.93
544442--544496	26	2.1	26	82	0	65	36	16	20	27	1.93
545205--545281	36	2.2	35	93	4	136	32	10	16	40	1.83
552635--552666	2	16.0	2	100	0	64	50	0	0	50	1.00
555396--555475	3	26.3	3	97	2	151	32	0	67	0	0.91
555676--555704	12	2.3	13	94	5	51	24	6	20	48	1.74
557874--557923	24	2.1	24	85	7	66	26	2	12	60	1.43
567524--567557	17	2.1	16	88	5	50	14	8	0	76	1.01
575961--576040	35	2.3	35	81	12	94	55	10	8	26	1.62
576975--577025	24	2.1	24	96	0	93	27	23	9	39	1.86
578363--578401	18	2.2	18	95	4	71	64	2	0	33	1.08
578372--578413	18	2.3	18	84	8	50	66	4	0	28	1.12
578360--578420	17	3.6	17	80	8	54	65	3	1	29	1.18
578562--578613	27	1.9	27	92	0	86	11	30	42	15	1.82
578557--578620	27	2.4	27	82	10	85	12	29	43	14	1.81
579211--579298	33	2.6	33	74	12	81	59	13	10	17	1.61
579737--579779	14	3.1	14	89	0	68	67	16	4	11	1.38
593874--593947	27	2.7	28	74	14	73	22	6	0	70	1.11
593875--593947	19	3.7	20	76	10	69	23	6	0	69	1.12
599153--599200	23	2.0	23	84	11	62	16	6	4	72	1.20
600901--600930	13	2.2	14	94	5	53	33	0	3	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601631--601703	19	3.7	20	77	14	71	24	6	0	68	1.14
604520--604609	42	2.1	42	83	4	119	17	23	25	33	1.96
612356--612405	25	2.0	25	92	0	82	46	30	8	16	1.75
620780--620841	23	2.7	23	82	0	79	61	9	16	12	1.56
621899--621928	15	2.0	15	93	0	51	23	26	36	13	1.92
621892--621998	53	2.0	55	96	3	200	28	22	32	16	1.96
622035--622103	15	4.9	15	68	20	58	24	30	31	13	1.93
622129--622238	29	3.8	29	97	0	211	16	30	30	23	1.96
622244--622301	23	2.6	23	94	5	102	24	44	6	24	1.77
622411--622462	25	2.1	25	92	0	86	28	9	32	28	1.89

Tables:   1   2   3   4   5   6   7