genome.fa.s15020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015020.1 Kokia drynarioides strain JFW-HI SEQ_130064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341705

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4528--4636	29	3.7	30	74	9	91	27	14	11	46	1.78
4525--4636	30	3.8	30	75	10	97	28	14	10	46	1.78
4584--4645	30	2.1	30	84	6	81	37	12	8	41	1.73
23836--23878	21	2.0	21	90	0	68	53	13	4	27	1.60
25737--25779	22	2.0	22	85	0	59	41	9	2	46	1.48
30136--30170	18	2.0	17	88	5	52	54	2	0	42	1.15
32990--33014	12	2.1	12	100	0	50	36	8	16	40	1.77
35538--35587	21	2.4	21	86	0	64	42	24	12	22	1.87
41604--41712	31	3.5	31	88	2	155	47	12	21	18	1.81
41832--41914	22	3.7	21	79	9	78	7	4	18	69	1.29
41861--41914	21	2.5	22	81	6	74	7	3	18	70	1.26
41934--42009	12	6.4	12	80	3	82	10	3	15	69	1.31
41884--42011	35	3.7	35	79	8	118	11	4	15	67	1.37
42193--42236	21	2.1	21	83	8	54	20	0	13	65	1.26
42166--42249	38	2.2	38	79	12	91	26	0	8	65	1.21
46526--46550	12	2.1	12	100	0	50	36	8	16	40	1.77
64948--64998	22	2.4	22	80	3	59	49	0	0	50	1.00
71865--72039	83	2.1	83	90	1	269	35	15	15	33	1.89
74312--74383	21	3.4	21	88	3	108	22	22	9	45	1.81
74315--74381	22	3.1	22	89	2	100	22	23	7	46	1.77
79766--79824	29	2.0	29	86	0	82	22	8	35	33	1.84
88257--88306	21	2.4	21	96	0	91	20	20	12	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88950--88994	16	2.6	17	82	6	56	28	6	0	64	1.19
91907--91937	6	5.2	6	92	0	53	16	29	0	54	1.42
95643--95691	18	2.7	18	77	0	53	38	28	14	18	1.90
101871--101900	12	2.5	12	94	0	51	36	13	40	10	1.78
102327--102359	17	2.0	17	94	5	59	18	18	6	57	1.60
107278--107313	16	2.2	17	90	5	56	55	2	0	41	1.14
129662--129763	45	2.3	45	91	0	168	24	22	10	42	1.85
139740--139860	48	2.5	46	92	7	172	32	5	2	59	1.34
139777--139855	27	3.1	27	65	20	80	34	6	1	58	1.32
141997--142076	35	2.3	35	75	10	83	25	17	22	35	1.95
146800--146947	37	4.0	36	83	3	161	35	33	17	13	1.89
146817--146947	37	3.6	36	85	3	163	36	32	16	13	1.88
146778--146947	73	2.3	74	82	3	191	34	31	18	15	1.92
148818--149033	37	5.8	36	81	3	225	33	32	19	14	1.92
148823--149034	74	2.9	73	84	2	282	33	32	19	14	1.92
156037--156255	37	5.9	37	79	2	242	33	31	19	15	1.94
156034--156243	111	1.9	111	84	2	278	32	31	19	16	1.94
156994--157040	4	11.8	4	82	17	62	2	21	0	76	0.89
156994--157040	11	4.3	11	81	8	60	2	21	0	76	0.89
157390--157416	9	3.0	9	100	0	54	88	0	0	11	0.50
157739--157799	20	3.0	20	76	9	61	55	0	3	40	1.16
157836--157885	14	3.5	14	84	10	57	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157838--157885	21	2.2	22	78	14	55	41	0	8	50	1.33
165471--165500	15	1.9	16	93	6	53	3	23	0	73	0.98
165469--165515	18	2.8	16	79	17	51	4	21	0	74	0.99
185910--185963	24	2.2	24	93	0	90	27	14	22	35	1.93
186341--186436	36	2.7	36	91	0	156	38	25	10	26	1.88
186520--186937	23	18.3	23	82	4	452	46	11	6	35	1.66
190154--190293	36	3.9	36	87	0	208	35	23	12	27	1.92
190373--190795	23	18.3	23	83	1	542	45	14	7	32	1.72
192696--192739	23	1.9	23	82	17	56	20	0	31	47	1.50
197849--197888	12	3.3	12	83	13	55	50	2	7	40	1.44
198557--198611	25	2.2	25	86	0	74	18	18	25	38	1.93
202734--202771	13	2.9	13	100	0	76	31	15	23	28	1.96
205293--205332	16	2.7	15	85	11	55	67	0	12	20	1.22
210906--210933	6	4.7	6	100	0	56	85	0	14	0	0.59
212044--212068	9	2.8	9	100	0	50	20	20	0	60	1.37
217175--217217	17	2.5	17	80	0	50	58	13	11	16	1.64
261268--261306	12	3.4	11	85	3	51	79	0	7	12	0.93
261268--261305	17	2.2	17	86	9	51	78	0	7	13	0.94
270074--270146	34	2.1	34	89	0	110	50	0	19	30	1.48
270366--270411	23	2.0	23	82	0	56	36	19	10	32	1.87
272875--272921	24	2.0	24	87	8	69	53	8	10	27	1.64
277310--277334	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278432--278473	18	2.3	18	88	8	59	2	28	0	69	1.01
283268--283310	16	2.5	17	77	7	52	76	0	16	6	0.99
288301--288331	14	2.3	14	94	5	55	29	16	9	45	1.79
293788--293826	21	1.9	21	89	5	62	12	12	7	66	1.43
308743--308782	20	2.0	21	85	5	55	30	15	20	35	1.93
318861--318918	26	2.1	29	84	12	79	50	5	1	43	1.35
319801--320025	112	2.0	112	100	0	450	44	12	12	31	1.79
321903--321938	18	2.0	18	88	0	54	50	0	0	50	1.00
322579--322648	29	2.4	30	87	2	97	44	14	4	37	1.65
349446--349476	16	1.9	16	93	0	53	35	0	0	64	0.94
349536--349568	16	2.0	17	88	5	50	45	0	0	54	0.99
351263--351324	32	1.9	32	87	6	90	54	8	6	30	1.55
354742--354798	29	2.0	29	92	0	96	42	19	19	19	1.90
354785--355719	465	2.0	467	90	1	1491	38	21	11	28	1.89
356002--356117	55	2.2	53	87	3	160	25	32	20	21	1.97
357654--357747	29	3.2	29	74	5	91	42	14	13	28	1.85
358473--358691	108	2.0	110	81	2	253	32	33	13	20	1.91
358473--358691	53	4.0	55	80	5	221	32	33	13	20	1.91
360662--360849	55	3.4	54	77	6	175	33	31	12	22	1.91
363592--363712	36	3.4	36	81	4	109	28	18	23	30	1.97
365871--365919	24	2.0	24	96	0	89	53	10	12	24	1.69
372016--372049	7	4.9	7	96	0	59	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372084--372189	53	2.0	53	96	0	194	43	3	16	36	1.66
374870--374894	10	2.5	10	100	0	50	48	8	28	16	1.74
375049--375093	23	2.0	23	86	0	63	62	11	6	20	1.50
375697--375758	31	2.0	31	100	0	124	32	12	16	38	1.86
381203--381243	19	2.2	19	86	8	57	26	24	19	29	1.98
381216--381282	18	3.6	19	84	9	86	26	26	23	22	2.00
384115--384146	15	2.2	14	94	5	55	43	9	28	18	1.81
405909--406337	220	2.0	220	98	0	822	28	23	15	32	1.95
419720--419778	27	2.2	27	90	0	91	45	20	6	27	1.76
433937--433974	17	2.2	17	95	0	67	21	10	13	55	1.67
439661--439718	21	2.8	21	81	5	64	37	25	10	25	1.88
441638--441671	18	1.9	17	88	5	50	23	11	8	55	1.63
453858--453908	19	2.7	19	84	3	68	74	1	1	21	1.02
454053--454095	11	3.9	11	80	20	54	79	0	2	18	0.85
455381--455421	19	2.3	18	80	19	50	21	7	9	60	1.52
456013--456399	102	3.8	101	81	2	418	28	18	15	37	1.92
456246--456561	50	6.2	50	70	4	211	27	18	17	36	1.93
456013--456386	204	1.8	202	84	4	502	28	18	15	37	1.91
456381--456711	102	3.3	102	85	0	448	27	19	17	35	1.94
456246--456561	152	2.1	152	88	0	470	27	18	17	36	1.93
456143--456640	254	2.0	254	85	2	678	27	18	17	37	1.93
458038--458119	25	3.1	25	76	15	76	62	4	7	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458227--458271	16	2.8	16	86	6	56	68	0	8	22	1.16
458881--459049	90	1.9	90	96	2	313	32	13	12	42	1.81
464633--464699	34	2.0	34	100	0	134	49	5	14	29	1.68
467604--467735	67	2.0	67	92	0	219	38	28	15	17	1.91
468449--468517	22	3.4	21	69	24	58	42	20	14	23	1.89
468470--468511	16	2.6	16	88	7	59	40	21	14	23	1.90
468560--468584	7	3.6	7	100	0	50	44	16	12	28	1.83
478833--478872	16	2.5	16	88	8	55	37	25	15	22	1.93
480368--480419	20	2.8	18	76	21	54	40	1	5	51	1.37
480395--480508	56	1.9	60	81	10	137	43	3	2	50	1.33

Tables:   1   2   3   4   5