genome.fa.s15020.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015020.1 Kokia drynarioides strain JFW-HI SEQ_130064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341705

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887623--887690	31	2.2	31	89	7	104	32	13	11	42	1.80
897074--897155	26	3.2	26	83	0	101	29	19	20	30	1.97
910056--910090	10	3.2	11	88	12	54	34	20	0	45	1.51
911678--912769	545	2.0	543	89	1	1668	29	10	21	38	1.87
926580--926638	24	2.5	24	94	0	100	30	25	23	20	1.98
928588--928974	41	9.4	41	84	3	447	29	20	18	31	1.96
929205--929309	49	2.1	49	83	0	129	15	31	20	32	1.94
930078--930116	14	2.8	13	85	11	51	2	10	2	84	0.81
930069--930125	17	3.2	19	80	16	68	1	14	3	80	0.92
942446--942486	18	2.3	18	80	12	50	34	26	9	29	1.88
942948--943017	34	2.1	34	86	0	95	32	27	10	30	1.89
943615--943698	42	2.0	42	100	0	168	52	11	2	33	1.51
943725--943799	34	2.2	34	90	0	114	10	18	13	57	1.64
946729--946777	20	2.5	20	100	0	98	10	48	16	24	1.76
953026--953056	2	15.5	2	100	0	62	0	0	48	51	1.00
957574--957611	2	19.0	2	100	0	76	50	0	0	50	1.00
958768--958903	72	1.9	72	84	3	184	22	21	27	28	1.99
959285--959459	39	4.5	38	77	9	156	38	17	17	26	1.92
959286--959462	78	2.3	78	80	5	189	38	18	16	25	1.92
967256--967323	19	3.7	18	75	9	57	64	2	2	29	1.22
967267--967323	18	3.1	17	75	12	51	63	1	3	31	1.22
967534--967579	19	2.4	19	85	0	65	30	4	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967532--967746	9	23.2	9	67	17	93	32	3	2	61	1.26
967602--967702	10	10.4	10	69	12	59	30	2	2	63	1.24
967584--967655	28	2.6	28	80	12	85	31	2	2	62	1.24
967630--967746	19	6.3	19	68	15	75	29	2	3	64	1.23
967726--967783	20	3.0	20	76	16	61	32	0	3	63	1.11
967873--968087	91	2.4	90	79	5	236	35	6	18	39	1.77
968342--968399	28	2.1	28	100	0	116	56	13	8	20	1.63
968533--968561	4	7.2	4	100	0	58	75	0	0	24	0.80
969260--969331	20	3.5	21	90	7	112	6	5	20	66	1.36
969300--969370	34	2.2	32	85	12	92	7	4	22	66	1.34
969334--969431	22	4.3	22	75	6	88	9	7	18	65	1.44
969313--969394	34	2.4	34	83	6	94	8	4	18	68	1.34
969334--969433	46	2.2	46	83	0	119	9	7	19	65	1.44
969334--969429	11	8.5	11	71	11	59	9	7	17	65	1.44
969280--969433	12	13.8	12	68	15	71	8	6	20	64	1.43
980999--981482	244	2.0	244	98	0	941	36	15	12	35	1.85
985092--985123	14	2.3	14	100	0	64	59	6	21	12	1.55
985138--985169	2	16.0	2	100	0	64	50	0	50	0	1.00
989587--989624	20	1.9	20	88	0	58	47	21	2	28	1.64
993730--993791	23	2.7	23	90	5	81	16	9	22	51	1.73
999408--999464	30	1.9	30	100	0	114	49	14	15	21	1.80
1000577--1000631	28	2.0	28	96	0	101	27	30	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000581--1000641	28	2.2	28	87	0	86	29	32	18	19	1.95
1003314--1003412	43	2.3	42	82	5	119	32	4	7	56	1.45
1014463--1014488	8	3.2	8	100	0	52	11	0	38	50	1.39
1015071--1015125	27	2.0	27	100	0	110	63	3	0	32	1.12
1015823--1015888	29	2.2	28	82	10	78	51	7	10	30	1.64
1016680--1016757	34	2.3	34	84	0	93	32	16	24	26	1.96
1017756--1017850	32	2.8	34	80	13	99	57	3	0	38	1.14
1017778--1017854	32	2.4	32	88	2	109	55	2	0	41	1.13
1017892--1017956	15	4.2	16	68	18	57	50	0	1	47	1.10
1017863--1017956	26	4.0	25	74	19	85	47	0	1	51	1.07
1022398--1022448	24	2.1	24	92	0	84	56	7	11	23	1.61
1029073--1029151	39	2.0	39	100	0	158	36	25	32	5	1.78
1037240--1037864	49	12.7	49	73	8	401	38	18	24	18	1.93
1037344--1037861	148	3.5	148	87	1	653	38	18	24	18	1.93
1037235--1037758	197	2.7	197	80	6	521	38	19	24	17	1.92
1037240--1037866	99	6.4	98	78	4	523	38	18	24	18	1.93
1044421--1044722	147	2.1	147	93	0	516	27	10	27	34	1.90
1045888--1045943	26	2.1	28	86	6	80	35	1	0	62	1.06
1059071--1059198	50	2.5	52	80	10	138	38	9	16	35	1.81
1066231--1066280	23	2.1	24	92	3	84	26	16	28	30	1.96
1066264--1066326	22	2.7	23	75	7	65	19	19	38	23	1.93
1081170--1081226	27	2.1	27	93	0	96	7	24	5	63	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085467--1085599	31	4.3	31	83	7	155	51	21	0	27	1.53
1085466--1085577	33	3.4	32	85	8	145	52	21	0	25	1.52
1085566--1085616	12	4.1	13	85	7	70	49	15	1	33	1.56
1085566--1085616	25	2.0	25	92	0	84	49	15	1	33	1.56
1086615--1086664	23	2.1	24	88	3	75	56	12	10	22	1.65
1088933--1089115	29	6.3	29	77	3	181	45	24	12	18	1.83
1088933--1089115	87	2.1	87	81	4	217	45	24	12	18	1.83
1097785--1097816	11	2.9	11	100	0	64	46	18	9	25	1.79
1117829--1117882	12	4.3	12	77	13	56	1	18	0	79	0.82
1117826--1117885	24	2.4	26	86	8	81	1	18	0	80	0.80
1124408--1124448	17	2.4	17	91	0	73	19	19	2	58	1.50
1136523--1136761	23	10.5	23	75	13	199	43	19	23	12	1.85
1136616--1136761	48	3.1	47	91	3	215	43	21	23	10	1.85
1136616--1136761	71	2.1	71	87	7	208	43	21	23	10	1.85
1138565--1138648	41	2.0	41	93	0	141	27	33	8	30	1.86
1145367--1145605	23	10.5	23	75	13	199	43	19	23	12	1.85
1145460--1145605	48	3.1	47	91	3	215	43	21	23	10	1.85
1145460--1145605	71	2.1	71	87	7	208	43	21	23	10	1.85
1147409--1147492	41	2.0	41	93	0	141	27	33	8	30	1.86
1150394--1150495	27	3.8	27	89	3	152	34	26	16	22	1.95
1150500--1150656	81	2.0	80	85	1	215	30	25	18	25	1.98
1160207--1160260	26	2.2	24	83	12	65	25	5	12	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168416--1168483	31	2.2	30	84	2	82	48	2	1	47	1.26
1168421--1168491	31	2.3	31	82	4	81	50	2	1	45	1.25
1174503--1174708	98	2.1	99	96	1	378	39	16	20	23	1.92
1179205--1179237	17	2.0	16	94	5	57	78	3	12	6	1.04
1181348--1181425	25	3.1	25	100	0	156	24	7	15	52	1.68
1186236--1186273	3	12.7	3	100	0	76	68	0	0	31	0.90
1186979--1187006	4	7.0	4	100	0	56	0	25	0	75	0.81
1187439--1187925	263	1.9	263	80	6	583	31	13	11	43	1.79
1187975--1188030	26	2.2	26	86	0	76	39	5	1	53	1.34
1189153--1189208	19	2.8	20	78	13	62	35	3	0	60	1.14
1189169--1189208	20	2.0	21	85	9	57	32	2	0	65	1.06
1190473--1190515	12	3.6	12	81	12	61	16	18	16	48	1.81
1190470--1190529	24	2.6	23	89	5	93	16	15	18	50	1.79
1190619--1190678	24	2.6	23	86	2	84	26	13	18	41	1.87
1190917--1190957	5	8.4	5	91	5	57	80	0	14	4	0.87
1190928--1190957	9	3.2	9	95	4	51	80	0	20	0	0.72
1197027--1197055	14	2.1	14	100	0	58	37	20	6	34	1.80
1203009--1203036	3	9.3	3	100	0	56	67	0	0	32	0.91
1206987--1207053	31	2.2	30	81	5	71	20	14	10	53	1.70
1207025--1207136	59	1.9	59	82	10	140	25	10	11	52	1.69
1214791--1214851	17	3.5	17	86	6	79	49	13	18	19	1.79
1214791--1214859	17	4.0	17	78	1	66	47	11	21	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214804--1214873	34	2.1	34	86	0	95	47	10	21	21	1.80
1215267--1215304	18	2.1	19	90	5	60	2	34	0	63	1.09
1218274--1218334	30	2.0	31	93	3	106	27	14	18	39	1.90
1235054--1235092	17	2.3	17	86	0	51	17	12	23	46	1.83
1235526--1235557	16	2.0	16	100	0	64	37	0	6	56	1.25
1238396--1238437	21	2.0	21	86	9	59	30	14	21	33	1.93
1238786--1238954	77	2.2	76	83	1	212	27	18	18	35	1.94
1242836--1242953	34	3.5	33	82	5	137	18	12	28	39	1.88
1243847--1243888	21	2.0	21	90	0	66	21	26	33	19	1.97
1248791--1248943	34	4.5	33	87	3	207	16	11	32	39	1.85

Tables:   1   2   3   4   5