genome.fa.s15020.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015020.1 Kokia drynarioides strain JFW-HI SEQ_130064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341705

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492642--492689	21	2.3	21	85	7	62	68	0	29	2	1.01
499738--499962	108	2.1	107	89	4	337	43	11	11	34	1.76
500069--500113	22	2.0	22	100	0	90	42	4	26	26	1.74
500233--500299	35	1.9	35	87	0	98	17	37	2	41	1.65
500736--500795	30	2.0	30	96	0	111	45	10	16	28	1.80
505662--505736	17	4.4	17	84	1	87	20	36	1	42	1.60
506133--506196	31	2.0	32	85	8	87	60	3	6	29	1.36
508114--508589	78	5.9	78	82	4	477	25	17	25	31	1.97
508159--508589	158	2.7	157	84	4	528	25	17	25	31	1.97
508161--508589	237	1.8	237	83	2	574	26	17	25	31	1.97
508847--508988	49	2.9	49	78	4	124	21	24	16	38	1.93
508897--509153	49	5.2	49	73	5	187	21	24	15	37	1.93
508882--509186	98	3.1	96	81	5	330	20	25	14	39	1.91
510027--510051	2	12.5	2	100	0	50	52	0	0	48	1.00
510441--510628	41	4.5	43	82	5	158	26	26	11	35	1.91
514668--514838	83	2.1	83	93	0	288	32	26	8	32	1.87
515331--515561	43	5.5	42	80	3	223	27	25	11	35	1.90
518326--518370	19	2.4	19	85	3	65	6	13	0	80	0.91
525416--525626	108	2.0	108	89	1	325	41	11	12	34	1.79
525987--526027	20	2.1	20	86	4	57	65	0	9	24	1.22
526077--526121	24	1.9	22	82	13	54	66	4	6	22	1.33
528426--528467	22	2.0	22	85	4	59	14	7	7	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528881--529150	60	4.6	57	82	7	301	28	18	17	35	1.94
528902--529145	118	2.1	117	89	2	364	30	18	16	34	1.93
529992--530045	18	3.3	18	63	36	50	59	3	7	29	1.42
529982--530073	30	3.1	30	93	0	148	60	4	6	28	1.40
530529--530609	12	6.8	12	71	5	65	12	37	27	23	1.90
530547--530609	24	2.6	24	78	9	74	14	38	22	25	1.92
532344--532493	51	3.1	50	65	23	122	47	6	4	42	1.49
532289--533038	93	8.2	93	76	14	652	44	4	5	45	1.48
532472--532607	72	1.9	72	93	3	238	42	2	8	47	1.45
532544--533046	191	2.7	188	89	3	758	44	4	5	45	1.47
532544--533038	95	5.2	95	88	4	700	44	5	5	45	1.48
533080--533128	24	2.0	24	88	0	71	34	6	6	53	1.51
533148--533274	6	21.5	6	65	12	57	42	4	4	48	1.45
533211--533247	17	2.2	16	90	4	56	45	2	2	48	1.30
533331--533401	12	6.1	11	75	15	63	36	9	1	52	1.44
533321--533386	34	1.9	34	84	0	87	33	12	1	53	1.47
533357--533446	25	3.6	25	92	1	137	42	7	1	48	1.39
533412--533483	19	3.9	19	74	13	53	43	6	4	45	1.50
533355--533442	6	14.3	6	71	4	50	39	6	1	52	1.36
533339--533446	25	4.5	25	88	3	134	39	8	0	50	1.39
533432--533512	37	2.2	38	84	8	105	40	3	6	49	1.45
533431--533526	18	5.4	17	71	17	61	38	4	5	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533503--533537	17	2.1	16	89	5	52	37	5	0	57	1.23
535206--535300	46	2.1	46	100	0	190	23	17	18	40	1.92
537553--538175	60	10.9	58	74	13	313	38	15	15	30	1.88
537553--538175	59	10.9	58	73	13	304	38	15	15	30	1.88
537541--538209	119	5.9	112	75	11	444	38	16	15	30	1.89
537810--538207	54	7.2	53	78	12	320	36	16	15	31	1.89
537577--538208	54	11.1	55	73	13	315	37	15	15	31	1.88
537945--538209	110	2.4	107	84	4	327	35	17	16	29	1.93
539378--539420	17	2.4	18	88	7	61	23	0	9	67	1.19
539446--539517	20	3.7	19	71	10	56	30	5	5	58	1.44
546163--546189	14	1.9	14	100	0	54	51	14	7	25	1.68
546280--546314	6	5.8	6	93	0	52	54	25	0	20	1.45
546645--546773	64	2.0	64	93	0	222	29	15	13	41	1.85
550505--550546	14	2.9	15	78	7	59	57	9	7	26	1.56
550925--550970	24	1.9	23	86	8	65	56	6	4	32	1.45
551041--551074	13	2.6	13	85	0	50	58	11	0	29	1.33
553354--553383	2	15.0	2	100	0	60	0	50	0	50	1.00
553383--553413	2	15.5	2	100	0	62	48	0	0	51	1.00
555243--555267	7	3.6	7	100	0	50	76	0	24	0	0.80
558312--558357	22	2.1	22	83	0	56	17	6	10	65	1.45
559466--559787	125	2.6	122	81	5	349	22	21	16	40	1.91
559588--560184	210	2.8	209	88	1	849	22	22	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561072--561144	38	1.9	38	85	0	101	13	19	19	47	1.82
572007--572261	29	8.8	29	77	6	176	38	2	23	35	1.69
571977--572260	59	4.9	58	74	5	250	37	2	25	35	1.69
571993--572273	116	2.4	117	78	4	280	37	2	24	34	1.69
571955--572281	29	11.1	30	73	9	174	36	2	25	35	1.70
572767--572891	30	4.2	29	83	7	135	37	0	24	36	1.62
572768--572881	60	1.9	59	84	7	151	38	0	25	35	1.62
574400--574434	13	2.7	13	95	0	61	34	0	0	65	0.93
578865--578914	20	2.5	19	84	9	64	48	18	10	24	1.78
585735--585786	18	2.9	18	77	8	54	61	0	0	38	0.96
585764--585830	26	2.6	24	83	9	71	64	1	1	32	1.12
589059--589409	173	2.0	174	96	0	641	26	14	18	40	1.89
589559--589589	5	6.2	5	92	0	53	0	3	58	38	1.15
589751--589843	26	3.5	27	64	15	68	37	4	0	58	1.18
590629--590697	17	3.9	17	70	15	50	50	7	2	39	1.45
597578--597617	19	2.0	20	85	4	55	35	20	17	27	1.95
601800--601859	21	2.9	21	82	7	77	40	31	15	13	1.85
607862--607886	12	2.1	12	100	0	50	64	0	28	8	1.22
623764--623828	23	2.8	23	76	15	71	56	0	1	41	1.08
629235--629287	20	2.7	20	76	5	54	28	1	1	67	1.11
629259--629331	17	4.1	17	72	10	56	30	1	0	68	0.98
630685--630730	21	2.1	22	84	11	60	54	4	8	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632518--632614	11	8.8	11	79	0	95	22	19	31	25	1.98
632519--632610	22	4.2	22	85	0	121	23	19	30	26	1.98
632518--632615	33	3.0	33	89	0	151	22	19	31	26	1.98
632637--632673	16	2.4	16	90	4	58	8	8	32	51	1.61
632697--632750	25	2.1	26	83	13	67	27	0	27	44	1.55
638223--638268	2	23.0	2	100	0	92	50	50	0	0	1.00
639696--639774	21	3.8	21	81	8	92	35	26	18	18	1.95
639717--639774	7	8.3	7	82	0	71	34	27	20	17	1.95
639764--639815	22	2.4	22	90	0	77	21	17	34	26	1.95
639765--639815	11	4.6	11	80	0	66	21	15	35	27	1.94
640416--640453	20	1.9	20	89	10	60	76	5	18	0	0.97
641813--641837	12	2.1	12	100	0	50	68	0	24	8	1.16
641862--641936	30	2.5	30	88	0	114	25	28	33	13	1.93
642921--642973	27	1.9	27	84	3	70	35	24	3	35	1.74
644447--644481	12	2.8	12	91	4	52	28	0	20	51	1.47
646798--646841	3	14.7	3	100	0	88	34	0	0	65	0.93
653570--653649	39	2.0	40	90	2	126	31	21	17	30	1.96
653574--653666	39	2.4	38	82	7	98	31	22	17	29	1.96
654559--654626	32	2.2	31	82	10	77	35	0	4	60	1.17
660091--660169	27	2.9	28	81	11	83	54	0	1	44	1.08
661067--661140	31	2.5	30	77	14	82	45	0	0	54	1.00
662725--662770	23	2.1	22	84	15	60	28	13	10	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668430--668498	35	2.0	35	100	0	138	47	14	23	14	1.81
678505--678534	13	2.4	13	94	5	53	80	10	3	6	1.01
680117--680237	49	2.5	49	82	5	138	29	16	23	29	1.96
681283--681483	77	2.7	76	80	5	230	42	5	9	42	1.60
682792--682824	15	2.2	15	94	0	57	69	0	0	30	0.88
693939--694186	102	2.4	101	82	4	302	37	18	16	27	1.92
694180--694518	101	3.4	101	75	6	348	37	14	17	30	1.90
694175--694600	201	2.1	201	85	1	577	37	14	18	29	1.90
695267--695296	16	1.9	16	93	6	53	70	6	23	0	1.11
696401--696447	25	1.9	24	83	12	60	21	10	6	61	1.50

Tables:   1   2   3   4   5