Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015020.1 Kokia drynarioides strain JFW-HI SEQ_130064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341705

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 508 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1249899--1249953
21
2.6
21
82
0
56
21
21
40
16
1.91
1254878--1255024
34
4.3
34
85
5
190
17
12
27
42
1.86
1255796--1255851
21
2.7
21
77
0
58
19
19
41
19
1.91
1256179--1256547
184
2.0
185
84
2
481
31
18
17
32
1.95
1259170--1259390
107
2.1
107
93
1
372
42
7
8
41
1.64
1259285--1259309
13
1.9
13
100
0
50
48
0
0
52
1.00
1259317--1259688
122
3.0
124
85
4
516
44
6
8
40
1.63
1263111--1263199
25
3.5
25
73
10
81
32
12
21
33
1.90
1263920--1263976
21
2.8
20
76
10
53
29
7
28
35
1.83
1276807--1276848
21
2.0
21
86
9
59
54
0
40
4
1.21
1281175--1281206
15
2.2
15
94
5
57
37
6
31
25
1.81
1293716--1293753
20
1.9
19
89
5
58
36
2
7
52
1.45
1293955--1294046
25
3.6
25
71
8
76
28
16
22
32
1.96
1293978--1294051
28
2.8
26
74
9
80
27
17
21
33
1.96
1296511--1296702
96
2.0
96
93
0
330
36
15
26
21
1.93
1299204--1299451
123
2.0
125
87
4
358
42
8
10
38
1.70
1304928--1304982
23
2.3
24
87
6
76
25
25
5
43
1.76
1308891--1308991
41
2.5
41
81
3
114
37
8
29
23
1.85
1310864--1310897
15
2.1
17
89
10
54
38
5
47
8
1.59
1313754--1313796
3
14.3
3
100
0
86
32
0
0
67
0.91
1324449--1325204
381
2.0
381
93
0
1305
32
14
15
38
1.87
1328034--1328072
17
2.3
17
90
0
60
15
12
25
46
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1328074--1328157
41
2.0
41
93
0
141
28
5
30
34
1.81
1329620--1329645
2
13.0
2
100
0
52
50
0
0
50
1.00
1335076--1335116
21
2.0
21
85
9
57
51
0
2
46
1.14
1338001--1338062
4
14.8
4
73
9
52
72
6
3
17
1.19
1338000--1338063
21
3.0
20
78
17
67
71
7
3
17
1.22
1340842--1340884
18
2.4
18
80
7
52
51
0
2
46
1.13

Tables:   1   2   3   4   5

The End!