genome.fa.s15254.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015254.1 Kokia drynarioides strain JFW-HI SEQ_130299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1276691

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361180--361225	5	9.2	5	88	11	60	41	0	0	58	0.98
362365--362410	23	2.0	24	83	12	60	10	4	30	54	1.55
378609--378706	47	2.1	47	98	0	187	35	18	16	29	1.93
386783--386859	38	2.0	38	97	0	145	45	6	23	24	1.76
387487--387715	114	2.0	114	100	0	458	31	10	23	34	1.89
395859--395906	23	2.1	23	85	11	64	12	22	31	33	1.91
399974--400052	39	2.0	39	87	4	115	20	35	15	29	1.93
403522--403656	67	2.0	67	97	0	252	54	1	7	37	1.38
405289--405313	13	1.9	13	100	0	50	24	4	8	64	1.38
405410--405440	16	1.9	16	93	0	53	0	0	29	70	0.87
406160--406263	33	3.2	33	75	5	102	19	3	41	35	1.70
409322--409379	19	2.9	19	71	5	53	20	3	6	68	1.27
409441--409478	15	2.5	15	91	8	60	15	0	5	78	0.91
409433--409522	26	3.3	25	74	12	72	22	4	4	68	1.25
409303--409484	98	1.9	98	88	9	257	20	5	7	66	1.37
411148--411177	4	7.5	4	100	0	60	50	23	0	26	1.50
412419--412640	52	4.4	51	65	18	135	43	2	9	44	1.49
412216--412857	150	4.3	151	87	5	871	43	3	10	42	1.55
413882--414612	240	3.0	238	91	2	1113	37	6	13	42	1.69
415715--415757	3	14.3	3	100	0	86	65	0	0	34	0.93
416821--416960	30	4.7	30	72	13	103	33	27	5	34	1.78
416833--417384	29	18.8	30	68	14	253	32	26	3	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416833--417399	59	9.7	58	77	11	394	32	27	4	36	1.76
416833--417305	58	8.1	57	80	8	418	33	26	2	37	1.71
416833--417400	175	3.2	172	78	8	554	32	27	4	36	1.76
420193--420217	3	8.3	3	100	0	50	36	0	0	64	0.94
430838--430884	3	15.7	3	95	0	85	2	0	63	34	1.06
434252--434306	26	2.1	26	100	0	110	49	9	25	16	1.75
440731--440860	55	2.3	55	80	7	147	40	13	22	23	1.89
447173--447209	19	1.9	20	94	5	67	24	0	2	72	0.97
447577--447624	21	2.3	20	80	19	55	79	0	10	10	0.95
461530--461592	22	2.8	23	76	11	67	60	7	1	30	1.35
461536--461588	23	2.4	21	81	6	61	62	7	1	28	1.33
461850--461877	14	2.0	14	100	0	56	21	7	42	28	1.79
464875--464917	9	4.8	9	76	0	50	2	16	0	81	0.79
466059--466096	15	2.5	15	83	12	51	76	0	2	21	0.91
472602--472653	23	2.3	23	86	6	70	19	23	25	32	1.97
472614--472658	23	2.0	23	90	0	72	20	20	26	33	1.97
474734--474774	21	2.0	20	85	4	55	29	4	9	56	1.53
475538--475573	3	12.3	3	94	5	65	66	0	0	33	0.92
475538--475570	17	1.9	17	100	0	66	66	0	0	33	0.92
482530--482781	42	5.9	42	72	5	121	36	18	20	24	1.94
482525--482779	84	3.0	85	75	2	201	37	18	20	23	1.94
483206--483244	17	2.2	17	86	4	51	53	17	0	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488457--488486	13	2.3	13	94	0	51	23	6	3	66	1.30
496208--496249	19	2.1	21	86	8	61	38	2	14	45	1.58
496719--496747	3	9.7	3	100	0	58	65	0	0	34	0.93
505053--505118	24	2.8	24	83	0	69	25	21	21	31	1.98
505064--505146	24	3.5	24	83	3	96	25	19	22	32	1.97
505083--505145	23	2.7	23	87	2	81	25	22	22	30	1.99
505472--505513	20	2.2	20	87	8	61	45	9	11	33	1.73
508129--508260	67	2.0	67	95	0	237	17	15	24	42	1.88
509424--509469	20	2.3	20	85	10	60	43	17	8	30	1.79
511910--511985	21	3.6	21	78	5	73	21	15	18	44	1.86
512907--512961	14	3.8	14	75	20	51	38	7	16	38	1.76
516641--516699	29	2.1	28	84	9	75	59	0	3	37	1.14
518229--518338	58	1.9	58	82	0	139	41	24	14	19	1.88
518298--518354	29	2.0	29	89	0	87	43	19	15	21	1.87
519081--519212	53	2.5	53	84	0	165	31	37	12	18	1.88
519216--519374	43	3.7	43	90	0	237	30	38	15	15	1.88
533446--533522	14	5.8	13	73	15	61	71	9	2	16	1.23
533651--533689	10	3.8	10	86	6	51	66	5	2	25	1.25
533640--533692	11	4.8	11	81	6	54	67	3	1	26	1.17
540704--540756	26	2.0	26	100	0	106	50	11	11	26	1.71
540739--540779	21	2.0	21	90	0	64	53	7	7	31	1.56
549488--549597	55	2.0	55	87	0	157	25	9	15	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549956--549985	14	2.1	14	93	0	51	30	33	6	30	1.83
550078--550116	14	2.8	14	88	0	51	53	35	0	10	1.35
550070--550185	48	2.4	49	87	4	157	47	29	3	19	1.66
553257--553283	5	5.4	5	100	0	54	0	40	0	59	0.98
553346--553378	15	2.2	15	94	0	57	90	0	9	0	0.44
560551--560596	24	1.9	23	86	8	65	56	6	4	32	1.45
561640--562054	207	2.0	207	93	0	715	46	17	13	22	1.83
565663--565706	19	2.4	18	81	11	54	20	0	2	77	0.88
566692--566801	30	3.7	30	80	3	98	40	24	2	32	1.70
568954--569027	31	2.4	31	83	0	94	29	18	9	41	1.82
573525--573888	100	3.6	100	89	0	548	39	21	19	20	1.93
573525--573913	50	7.8	50	80	5	401	39	20	19	20	1.93
573525--573928	150	2.7	150	80	5	476	38	20	19	20	1.93
573958--574033	39	1.9	39	94	5	136	27	30	21	21	1.98
574378--574559	101	1.8	101	80	0	220	34	16	19	29	1.94
575838--575954	30	3.9	30	85	1	146	38	21	4	35	1.73
575804--575942	60	2.3	58	80	8	163	41	20	2	35	1.67
577609--577784	51	3.5	51	87	1	210	31	14	22	31	1.94
584899--585073	51	3.5	50	85	5	219	31	14	23	30	1.95
584896--585108	102	2.1	101	79	6	225	32	15	22	30	1.94
586512--586672	81	2.0	81	88	0	241	32	27	16	22	1.95
591540--591632	46	2.0	45	82	10	109	38	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596422--596482	28	2.2	25	78	18	68	73	1	3	21	1.06
596450--596497	15	3.3	15	77	11	55	77	4	0	18	0.93
596435--596497	28	2.2	29	86	5	94	76	3	0	20	0.93
596436--596493	13	4.4	12	77	16	53	77	3	0	18	0.91
598167--598197	15	2.1	15	93	0	53	35	12	22	29	1.91
601091--601115	10	2.5	10	100	0	50	48	0	32	20	1.50
602243--602278	11	3.4	11	88	3	56	83	2	0	13	0.76
602225--602278	20	3.1	16	79	15	54	79	5	1	12	0.98
605538--605592	20	2.7	20	82	2	74	12	18	32	36	1.88
612518--612615	16	5.6	16	69	19	70	12	18	28	40	1.86
612513--612615	36	2.8	37	88	1	136	13	18	28	39	1.88
612521--612615	37	2.6	36	88	1	127	12	17	29	40	1.87
614709--614782	29	2.4	32	78	17	86	31	5	12	51	1.61
616794--616831	19	2.1	19	90	9	62	36	7	5	50	1.54
619773--619830	27	2.2	26	81	12	64	62	1	0	36	1.06
625292--625451	80	2.0	80	97	0	302	33	13	20	33	1.91
633609--633646	16	2.2	18	86	9	53	57	15	5	21	1.57
643505--644086	61	9.7	59	80	8	563	28	18	15	37	1.91
643505--644086	120	4.8	117	79	6	544	28	18	15	37	1.91
644912--644967	17	3.5	17	71	14	55	62	3	10	23	1.43
644902--644968	31	2.1	33	88	5	102	65	2	8	22	1.34
644918--645010	30	3.1	30	84	1	96	64	4	5	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646082--646138	21	2.7	21	72	0	60	45	5	8	40	1.58
646167--646212	20	2.3	20	81	3	58	67	6	4	21	1.32
647404--647437	17	2.0	17	88	0	50	52	0	8	38	1.33
647408--647980	86	6.6	86	87	6	782	47	3	5	43	1.45
647408--647983	173	3.3	172	86	7	799	47	3	5	43	1.45
647408--647983	87	6.6	84	86	8	753	47	3	5	43	1.45
648011--648057	19	2.5	19	92	0	76	51	6	8	34	1.58
651860--652513	60	11.2	61	77	12	635	36	15	19	29	1.92
659279--659404	52	2.4	52	82	5	139	47	10	7	34	1.65
659307--659417	52	2.1	50	77	9	114	48	9	7	34	1.64

Tables:   1   2   3   4   5