genome.fa.s15254.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015254.1 Kokia drynarioides strain JFW-HI SEQ_130299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1276691

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074447--1074507	26	2.3	26	86	10	81	42	0	52	4	1.23
1074447--1074499	6	8.3	6	78	15	54	43	0	52	3	1.19
1080431--1080486	11	5.6	11	77	16	52	50	0	1	48	1.11
1081231--1081307	27	2.7	29	80	8	95	51	0	1	46	1.09
1081236--1081289	12	3.7	15	73	16	51	51	0	1	46	1.11
1082148--1082429	143	2.0	143	84	2	370	35	12	15	37	1.84
1085090--1085208	57	2.1	57	84	3	150	31	11	12	43	1.79
1110656--1110945	52	5.6	52	86	3	345	36	23	13	26	1.92
1121782--1122023	119	2.0	119	100	0	484	29	22	16	31	1.96
1124184--1124210	6	4.5	6	100	0	54	37	0	14	48	1.45
1124728--1124765	3	12.7	3	100	0	76	31	0	0	68	0.90
1126258--1126436	97	1.8	97	89	2	279	38	15	17	29	1.90
1126857--1127067	29	7.2	30	79	8	202	39	1	23	35	1.66
1126856--1127067	59	3.6	58	77	10	182	39	1	23	34	1.66
1126759--1127067	30	10.6	29	73	14	185	37	3	24	33	1.74
1128792--1128835	17	2.6	17	85	10	63	54	4	0	40	1.21
1129186--1129248	33	1.9	33	81	12	76	34	1	7	55	1.39
1131877--1131927	22	2.3	22	89	0	75	37	5	11	45	1.65
1135726--1135761	18	2.0	18	88	0	54	52	2	0	44	1.15
1135699--1135938	107	2.3	105	85	4	331	52	11	6	29	1.61
1137718--1137755	18	2.3	17	83	16	53	34	2	5	57	1.35
1141082--1141135	20	2.7	20	80	5	56	33	7	11	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1141859--1141885	14	1.9	14	100	0	54	0	59	0	40	0.98
1142588--1142623	11	3.3	11	88	0	54	52	0	0	47	1.00
1147670--1147703	17	1.9	18	94	5	61	44	8	0	47	1.34
1150281--1150340	24	2.5	24	94	0	102	28	15	6	50	1.69
1150469--1150498	15	1.9	16	93	6	53	3	6	33	56	1.42
1150861--1150903	22	1.9	23	85	4	61	25	9	0	65	1.22
1158053--1158107	28	2.0	28	85	0	74	47	1	1	49	1.23
1158203--1158242	21	1.9	21	84	0	53	32	0	5	62	1.17
1177132--1177199	26	2.6	26	88	2	91	35	22	16	26	1.94
1185055--1185268	24	8.9	24	84	1	232	27	23	14	35	1.93
1185055--1185268	72	3.0	72	83	1	259	27	23	14	35	1.93
1191043--1191082	20	2.0	20	85	0	53	52	0	10	37	1.35
1193469--1193578	35	3.2	34	83	7	125	41	0	3	53	1.24
1193501--1193578	6	13.5	6	70	17	58	44	1	2	51	1.23
1193501--1193547	23	2.0	23	88	8	69	42	0	4	53	1.20
1193469--1193578	52	2.1	52	87	0	157	41	0	3	53	1.24
1193504--1193559	11	4.9	11	80	10	60	37	1	3	57	1.27
1193469--1193578	17	6.4	17	82	7	132	41	0	3	53	1.24
1194295--1194343	18	2.7	18	80	3	53	63	8	4	24	1.40
1194295--1194344	21	2.3	22	86	3	75	62	8	4	26	1.41
1194983--1195344	29	12.4	28	73	14	225	36	25	2	35	1.70
1194966--1195398	58	7.4	59	82	5	364	36	24	3	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204527--1204789	120	2.2	120	95	0	463	36	19	20	23	1.95
1204647--1205285	200	3.1	204	83	4	831	35	18	23	23	1.96
1205624--1205716	17	5.3	18	79	7	93	38	4	4	52	1.41
1206440--1206489	21	2.3	22	89	3	84	60	8	6	26	1.48
1207198--1207411	39	5.4	40	72	10	163	26	16	26	30	1.97
1207234--1207411	79	2.3	79	89	2	268	26	17	26	29	1.98
1207217--1207726	42	12.8	41	71	14	255	26	18	25	30	1.98
1207579--1207644	33	2.0	33	85	5	89	24	18	28	28	1.98
1207544--1207686	75	2.0	71	86	8	198	24	18	28	28	1.98
1207836--1208055	96	2.3	96	82	3	266	25	29	14	30	1.95
1207836--1208053	97	2.3	95	83	3	267	25	28	14	30	1.95
1207881--1208087	96	2.1	96	82	4	238	26	25	14	34	1.93
1208315--1208490	49	3.6	49	74	0	163	19	30	15	34	1.93
1209398--1209455	5	10.0	6	77	15	52	0	18	0	81	0.70
1209400--1209442	11	3.9	11	84	9	61	0	18	0	81	0.69
1209400--1209451	27	1.9	27	84	7	70	0	19	0	80	0.71
1209399--1209472	10	7.3	10	76	8	69	2	13	1	82	0.84
1209399--1209480	11	7.2	11	76	10	60	2	12	2	82	0.86
1213994--1214232	30	8.1	29	75	7	171	37	3	19	40	1.68
1213995--1214222	57	3.9	59	80	7	207	37	3	18	40	1.68
1215215--1215253	7	5.7	7	93	6	71	25	0	0	74	0.82
1215254--1215295	13	3.4	12	81	12	50	78	0	2	19	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220718--1220824	21	5.6	21	75	20	126	52	5	7	34	1.53
1220738--1220840	8	13.6	8	79	8	83	49	5	8	35	1.58
1220719--1220832	29	3.7	29	72	21	88	51	5	7	35	1.53
1220738--1220840	16	6.8	16	77	12	101	49	5	8	35	1.58
1220718--1220840	37	3.3	37	100	0	246	51	5	8	34	1.55
1223884--1223964	39	2.1	39	95	0	144	39	8	13	38	1.76
1226675--1226715	16	2.5	17	88	7	59	43	0	21	34	1.53
1226686--1226737	16	3.2	16	83	0	59	46	0	21	32	1.52
1226905--1226972	35	1.9	35	93	0	118	58	1	1	38	1.16
1230726--1230798	30	2.3	32	86	4	96	56	8	0	35	1.29
1234702--1234741	20	2.0	20	90	5	62	2	15	0	82	0.77
1234714--1234743	14	2.2	13	94	5	51	0	20	0	80	0.72
1234922--1234968	22	2.2	21	84	3	58	78	4	4	12	1.04
1236417--1236497	39	2.1	39	90	0	126	51	22	17	8	1.72
1236839--1237012	61	2.9	61	75	5	154	41	10	2	44	1.53
1250798--1250840	23	1.9	23	85	4	61	46	6	4	41	1.51
1254596--1254634	17	2.3	17	90	0	60	15	12	25	46	1.81
1258916--1258966	19	2.6	19	75	12	50	56	3	3	35	1.36
1258955--1259063	9	11.8	9	71	23	68	63	1	3	31	1.22
1262257--1262290	17	2.0	17	88	0	50	58	0	0	41	0.98
1264244--1264276	7	4.9	7	88	3	50	33	0	0	66	0.92
1264235--1264276	14	3.2	13	83	9	59	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1268339--1268365	2	13.5	2	100	0	54	0	48	0	51	1.00

Tables:   1   2   3   4   5

The End!