genome.fa.s15254.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015254.1 Kokia drynarioides strain JFW-HI SEQ_130299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1276691

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881507--881670	87	1.9	88	87	3	242	32	25	3	39	1.71
881507--881699	58	3.3	58	81	7	171	32	26	3	37	1.72
881507--881699	29	6.7	29	70	8	124	32	26	3	37	1.72
881507--881699	87	2.2	87	82	5	239	32	26	3	37	1.72
881507--881721	87	2.4	85	79	12	213	33	26	2	38	1.71
881609--881733	58	2.1	59	82	7	157	32	29	2	36	1.71
881739--881814	29	2.6	30	78	14	86	31	26	6	35	1.82
881711--881819	57	1.9	56	81	10	132	33	27	6	33	1.82
881771--881835	28	2.3	29	86	2	87	33	29	9	27	1.88
882988--883018	16	1.9	16	93	0	53	25	3	29	41	1.71
883622--883646	12	2.1	12	100	0	50	60	8	8	24	1.52
887697--887892	42	4.8	40	83	5	223	29	25	16	28	1.97
889621--889724	50	2.2	50	84	6	135	27	10	17	44	1.82
889725--889820	46	2.1	46	88	0	138	31	10	19	38	1.86
890190--890230	14	2.9	15	85	10	59	43	7	0	48	1.30
894187--894233	24	2.0	24	91	0	76	36	8	6	48	1.59
894188--894239	24	2.2	24	85	0	68	38	7	7	46	1.61
895086--895110	10	2.5	10	100	0	50	40	0	12	48	1.40
916350--916394	23	2.0	22	82	8	54	75	6	13	4	1.15
917647--917708	21	3.0	21	72	25	51	14	3	4	77	1.06
917627--917712	38	2.2	38	80	13	97	13	3	6	75	1.14
917901--917947	4	12.0	4	84	4	51	19	4	4	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917865--917946	22	3.7	22	76	11	69	20	2	4	71	1.16
923147--923213	33	2.0	33	100	0	134	40	14	17	26	1.89
924613--924643	15	2.1	15	93	0	53	77	3	12	6	1.08
925633--926015	100	3.8	100	82	3	369	35	18	18	27	1.94
925633--926013	50	7.6	50	68	8	200	35	18	18	27	1.94
925633--926003	200	1.9	201	82	4	480	35	18	17	27	1.94
925616--926056	201	2.2	200	79	7	482	35	17	18	28	1.94
928126--928162	3	12.7	3	94	5	67	35	0	0	64	0.94
928161--928195	3	11.7	3	100	0	70	34	31	0	34	1.58
928194--928256	19	3.2	19	82	14	67	23	1	6	68	1.22
930534--930740	103	2.0	104	94	0	362	33	12	15	38	1.84
931396--931424	11	2.7	11	94	5	51	89	0	0	10	0.48
931471--931630	60	2.7	59	87	7	216	45	3	17	33	1.64
931471--931639	30	5.6	30	78	5	162	43	2	16	36	1.63
933121--934051	123	7.6	123	86	0	1229	21	19	18	39	1.92
934280--934397	49	2.4	49	84	2	148	20	22	18	38	1.94
937678--937851	30	6.2	29	72	17	111	40	1	20	37	1.60
937739--937780	21	2.0	21	90	0	66	45	2	14	38	1.58
937760--937851	29	3.1	28	78	6	85	42	1	19	36	1.59
937710--937809	50	2.0	50	86	3	139	38	2	19	41	1.63
937679--937839	80	2.0	81	83	6	202	40	1	19	38	1.60
938300--938338	20	1.9	21	89	5	62	7	46	28	17	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945377--945421	20	2.2	21	84	4	56	37	2	2	57	1.23
945502--945539	9	4.2	9	80	12	51	31	7	10	50	1.66
945609--945638	14	2.1	14	93	0	51	50	20	0	30	1.49
945926--946050	53	2.3	54	87	5	182	48	9	4	37	1.55
946630--946667	14	2.9	14	80	11	53	47	0	0	52	1.00
948238--948278	20	2.0	20	86	9	57	56	2	2	39	1.26
951414--951452	15	2.7	14	84	7	51	23	7	5	64	1.40
951976--952030	23	2.5	23	94	5	96	21	14	20	43	1.87
963133--963950	406	2.0	405	96	0	1519	35	5	13	45	1.68
964427--964486	26	2.3	25	78	13	59	28	0	3	68	1.05
964448--964479	16	2.0	16	100	0	64	25	0	0	75	0.81
970999--971073	24	3.1	24	81	9	89	26	20	24	29	1.99
971008--971094	24	3.6	24	82	1	93	21	14	28	34	1.94
973644--973673	15	2.0	15	100	0	60	60	0	0	40	0.97
973837--973886	24	2.1	24	96	0	91	38	8	10	44	1.68
975882--975925	22	2.0	22	86	8	63	68	0	2	29	1.02
977246--977288	17	2.4	19	80	7	54	46	13	0	39	1.44
977418--977466	20	2.5	19	83	6	62	40	8	4	46	1.52
988473--988516	6	7.3	6	81	0	52	31	2	11	54	1.48
988473--988516	18	2.4	18	92	0	70	31	2	11	54	1.48
992887--992941	27	2.0	27	100	0	110	14	21	23	40	1.90
995702--995741	19	2.1	19	85	4	53	7	12	2	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997687--997840	81	1.9	81	83	0	200	26	18	24	30	1.98
1002286--1002402	35	3.4	35	80	4	96	39	16	15	29	1.89
1002674--1002712	18	2.2	17	90	4	60	30	15	5	48	1.66
1002827--1002986	48	3.1	48	72	22	142	25	7	16	51	1.70
1002709--1002986	110	2.5	109	88	4	387	25	8	15	50	1.71
1003224--1003461	117	2.0	117	88	0	350	33	18	16	31	1.94
1003446--1003571	63	2.0	63	96	0	234	23	11	20	44	1.83
1006073--1006114	22	1.9	22	85	0	57	42	2	11	42	1.54
1009115--1009169	27	2.0	27	92	0	92	23	30	16	29	1.96
1015715--1015750	18	1.9	19	94	5	65	16	5	27	50	1.68
1016174--1016214	22	1.9	22	85	5	57	31	2	19	46	1.63
1016766--1016793	14	2.0	14	100	0	56	50	0	7	42	1.30
1030005--1030056	27	1.9	27	84	0	68	15	26	34	23	1.94
1030034--1030086	27	2.0	27	84	0	70	20	35	28	15	1.93
1033509--1033556	25	1.9	25	86	0	69	31	0	12	56	1.37
1036045--1036072	13	2.2	13	100	0	56	50	0	0	50	1.00
1036064--1036101	17	2.3	17	90	4	60	57	2	0	39	1.12
1036861--1036894	17	2.0	17	94	0	59	52	2	0	44	1.16
1037139--1037178	19	2.1	19	85	0	53	30	30	37	2	1.71
1037203--1037254	27	1.9	27	88	7	79	21	28	30	19	1.97
1037315--1037349	16	2.2	16	95	5	63	42	0	0	57	0.99
1040181--1040232	26	2.0	26	88	0	77	63	3	7	25	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040192--1040241	26	1.9	26	83	0	64	62	8	6	24	1.46
1040325--1040373	22	2.2	22	96	0	89	46	28	4	20	1.68
1042212--1042273	6	10.2	6	73	16	56	43	3	1	51	1.27
1042210--1042273	17	4.0	15	85	4	74	42	3	1	53	1.26
1042367--1042406	18	2.2	18	86	0	53	42	35	0	22	1.54
1043056--1043215	80	2.0	80	92	0	266	41	10	21	27	1.85
1044176--1044466	59	4.9	60	82	5	342	35	28	3	32	1.73
1044176--1044515	30	11.5	29	79	7	303	36	27	3	32	1.74
1044176--1044515	59	5.7	59	79	9	286	36	27	3	32	1.74
1044176--1044515	89	3.8	84	76	8	277	36	27	3	32	1.74
1056150--1056672	205	2.6	205	90	0	816	36	19	21	22	1.95
1056490--1056811	158	2.0	158	93	1	547	35	21	19	23	1.96
1056285--1056976	363	1.9	363	84	2	924	36	19	21	22	1.95
1057315--1057402	6	15.2	6	68	15	60	39	3	0	56	1.16
1057328--1057388	19	3.4	18	88	8	97	39	3	0	57	1.15
1057496--1057535	18	2.2	18	86	0	53	42	35	0	22	1.54
1059165--1059530	30	12.5	29	76	11	243	33	30	4	31	1.77
1059165--1059487	30	11.1	29	80	10	295	34	29	4	31	1.77
1059177--1059493	59	5.4	58	78	9	286	35	29	3	31	1.75
1071399--1071616	60	3.7	60	81	7	239	24	15	10	50	1.75
1071388--1071643	118	2.2	114	84	6	309	23	14	10	51	1.72
1071429--1071616	59	3.2	59	84	3	243	23	15	11	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071792--1071970	31	6.0	30	69	16	97	49	11	13	25	1.76
1071784--1071894	58	1.9	59	84	1	152	48	10	15	25	1.77
1071847--1071964	31	3.9	31	75	18	115	51	11	11	25	1.71
1071792--1071961	89	1.9	90	85	1	234	50	11	13	25	1.75
1071931--1071977	24	2.0	24	91	0	76	59	12	8	19	1.58
1074060--1074127	34	2.0	34	100	0	136	41	17	14	26	1.88
1074345--1074425	7	13.0	6	75	18	60	48	0	49	2	1.14
1074351--1074422	36	2.0	36	89	5	110	48	0	48	2	1.16
1074447--1074502	19	2.9	18	85	12	76	44	0	51	3	1.18
1074447--1074510	7	9.6	7	77	17	57	43	0	51	4	1.22

Tables:   1   2   3   4   5