genome.fa.s114.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold114
Parameters: 2 7 7 80 10 50 1000
Length:  3219552

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289560--289609	2	25.0	2	100	0	100	0	50	0	50	1.00
292604--292654	25	2.0	25	84	3	66	31	3	0	64	1.11
298591--298744	80	1.9	80	95	0	281	31	29	14	25	1.95
304707--304747	11	3.8	11	83	3	57	29	0	0	70	0.87
304706--304756	19	2.8	19	85	11	63	29	0	0	70	0.87
304706--304756	17	2.8	18	83	16	54	29	0	0	70	0.87
304803--304867	28	2.3	29	82	12	82	30	6	0	63	1.19
305860--305898	2	19.0	2	89	5	60	51	2	0	46	1.14
308187--308224	16	2.4	16	86	8	51	31	0	0	68	0.90
308697--308727	2	15.5	2	100	0	62	48	0	51	0	1.00
311021--311088	20	3.3	21	73	8	68	58	0	0	41	0.98
317778--317815	18	2.1	18	100	0	76	42	5	0	52	1.24
324275--324307	2	16.5	2	100	0	66	0	51	0	48	1.00
326522--326563	13	3.2	13	77	12	50	33	0	0	66	0.92
327813--327847	3	11.7	3	100	0	70	34	0	0	65	0.93
327986--328021	2	18.0	2	100	0	72	50	0	0	50	1.00
328207--328234	2	14.0	2	100	0	56	0	0	50	50	1.00
329392--329426	3	11.7	3	100	0	70	68	0	0	31	0.90
331980--332027	15	3.3	15	82	2	53	60	0	0	39	0.97
331991--332037	19	2.5	19	74	16	53	59	0	0	40	0.97
332944--332989	21	2.2	20	80	3	56	52	0	0	47	1.00
337247--337302	20	2.8	20	77	17	53	55	1	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338585--338620	19	2.0	19	89	10	58	61	0	0	38	0.96
338589--338637	19	2.7	18	78	6	53	61	0	0	38	0.96
338634--338707	15	5.1	14	74	12	53	37	2	1	58	1.21
339374--339467	11	8.8	11	72	16	56	57	1	1	40	1.13
339384--339439	22	2.5	23	77	8	62	57	0	1	41	1.09
343386--343436	16	3.0	17	80	5	59	49	0	1	49	1.12
343415--343487	29	2.5	29	82	6	85	42	2	0	54	1.14
345545--345576	3	10.7	3	93	0	55	62	0	3	34	1.11
355410--355440	14	2.2	14	94	0	53	22	3	0	74	0.96
355853--355920	25	2.9	23	76	20	61	66	0	7	26	1.18
359864--359908	15	3.0	15	93	6	74	57	0	6	35	1.25
360457--360501	3	14.7	3	95	4	81	33	0	0	66	0.92
360971--361012	21	2.0	21	86	13	61	40	0	0	59	0.97
361273--361347	36	2.1	36	97	0	141	41	6	0	52	1.28
361717--361762	19	2.5	19	89	3	67	47	0	6	45	1.28
363471--363509	2	19.5	2	100	0	78	48	0	0	51	1.00
368000--368040	6	6.8	6	97	0	73	12	17	51	19	1.76
368924--368980	28	2.0	28	86	6	80	35	14	24	26	1.93
372862--372900	11	3.5	11	82	0	51	56	28	15	0	1.40
372862--372900	16	2.4	17	91	4	62	56	28	15	0	1.40
375414--375447	17	2.1	17	88	5	52	67	0	0	32	0.91
376479--376643	80	2.1	76	82	6	188	46	4	1	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376723--376774	24	2.1	25	85	3	70	51	1	0	46	1.12
377612--377694	36	2.3	38	74	18	86	51	0	1	46	1.08
377915--377951	2	18.5	2	100	0	74	51	0	0	48	1.00
382066--382096	2	15.5	2	93	0	53	51	3	0	45	1.17
382341--382383	21	2.1	21	82	4	52	74	2	0	23	0.93
385637--385677	22	1.9	22	85	5	57	56	0	2	41	1.13
395190--395252	3	21.3	3	83	6	76	31	1	1	65	1.12
395578--395674	35	2.8	34	81	10	124	57	0	0	42	0.98
396676--396719	5	8.8	5	97	0	79	0	15	0	84	0.63
396833--396857	2	12.5	2	100	0	50	0	0	48	52	1.00
402618--402657	2	20.0	2	100	0	80	50	0	0	50	1.00
406058--406088	2	15.5	2	100	0	62	48	0	0	51	1.00
406237--406285	19	2.6	19	83	3	55	55	6	0	38	1.25
406462--406513	22	2.4	22	84	12	63	48	1	1	48	1.24
408120--408188	33	2.2	30	82	12	86	47	2	1	47	1.25
410289--410326	17	2.2	17	86	13	51	47	5	0	47	1.24
410401--410470	26	2.7	24	81	14	77	65	2	1	30	1.15
410503--410537	4	9.0	4	87	6	54	0	22	0	77	0.78
410502--410536	16	2.2	16	94	0	61	0	20	0	80	0.72
410633--410666	11	3.2	11	83	8	52	70	0	0	29	0.87
410645--410774	58	2.3	58	78	16	137	58	0	0	40	1.03
410651--410779	59	2.2	57	75	16	124	58	0	0	40	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410731--410774	17	2.6	17	92	0	79	52	0	0	47	1.00
412220--412271	17	2.8	20	77	22	67	59	3	3	32	1.33
412224--412273	18	2.7	18	81	12	66	60	4	4	32	1.34
412370--412435	8	8.7	7	77	14	60	1	24	0	74	0.91
412370--412435	15	4.4	14	76	14	60	1	24	0	74	0.91
412384--412435	15	3.4	15	84	5	68	0	25	0	75	0.81
421765--421807	16	2.8	16	76	16	54	39	0	0	60	0.97
421971--422010	15	2.7	15	84	11	55	72	0	0	27	0.85
422047--422091	22	2.0	22	87	8	65	62	0	0	37	0.96
422309--422392	24	3.3	24	70	18	71	41	0	0	58	0.98
422317--422418	34	2.9	34	74	10	89	40	0	0	59	0.97
422318--422403	18	4.9	18	73	16	83	43	0	0	56	0.99
422372--422453	26	3.1	26	82	8	94	34	1	2	62	1.16
422382--422457	26	2.9	27	84	5	102	34	1	2	61	1.18
422445--422496	23	2.3	23	80	16	63	53	0	0	46	1.00
426461--426522	33	1.9	32	93	3	106	20	22	17	38	1.93
427915--427956	21	2.0	21	100	0	84	23	9	19	47	1.78
429359--429389	15	2.1	15	100	0	62	6	19	12	61	1.53
433955--433984	3	10.0	3	100	0	60	33	0	0	66	0.92
441272--441330	31	1.9	31	92	0	100	32	16	13	37	1.88
441691--441734	17	2.6	17	85	7	54	9	22	0	68	1.18
448316--448352	2	18.5	2	88	0	56	43	0	5	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451960--451991	16	2.0	16	100	0	64	37	6	12	43	1.68
453634--453726	28	3.3	28	76	8	100	45	0	3	51	1.17
453613--453764	29	5.3	29	75	19	117	40	0	2	57	1.13
453613--453758	57	2.5	57	77	11	156	40	0	2	56	1.13
453642--453721	27	2.8	28	81	14	94	40	0	3	56	1.17
453613--453758	58	2.5	57	74	11	156	40	0	2	56	1.13
453746--453791	17	2.7	17	82	0	65	54	0	2	43	1.12
453780--453812	15	2.1	16	94	5	59	63	0	0	36	0.95
453771--453809	20	2.0	19	85	5	51	64	0	0	35	0.94
457289--457330	16	2.6	16	84	3	57	14	2	0	83	0.75
502449--502743	145	2.0	145	98	0	572	24	10	14	50	1.74
505742--505814	34	2.1	34	100	0	146	24	17	13	43	1.86
509317--509347	16	1.9	16	93	0	53	25	16	12	45	1.83
512218--512250	11	3.3	10	88	12	50	0	0	9	90	0.44
516827--516864	10	3.7	10	86	6	58	50	7	0	42	1.31
519385--520027	353	1.8	344	90	4	1033	24	15	18	42	1.88
529232--529363	65	2.0	65	92	2	221	44	12	6	37	1.66
529938--529990	2	27.0	2	84	3	72	0	52	3	43	1.19
538879--539307	232	1.8	234	89	2	675	24	13	21	39	1.90
540121--540162	18	2.3	19	87	4	59	14	11	11	61	1.56
543948--543983	18	1.9	19	88	5	56	22	19	2	55	1.56
544146--544178	2	16.5	2	93	0	57	45	51	3	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550854--550899	22	2.1	22	87	0	65	34	0	0	65	0.93
551047--551081	2	17.5	2	100	0	70	48	0	0	51	1.00
554363--554393	9	3.6	9	95	4	55	0	6	0	93	0.35
561556--561584	13	2.1	14	93	6	51	3	27	0	68	1.05
563647--563682	3	12.0	3	100	0	72	33	0	0	66	0.92
564277--564308	2	16.0	2	93	0	55	46	0	3	50	1.17
572152--572218	22	3.1	21	72	18	57	55	0	0	44	0.99
587496--587543	19	2.5	19	80	16	55	60	0	0	39	0.97
587480--587540	25	2.3	27	81	18	76	55	0	0	44	0.99
587860--587906	3	15.7	3	90	0	76	61	0	38	0	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13