genome.fa.s114.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold114
Parameters: 2 7 7 80 10 50 1000
Length:  3219552

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588664--588701	2	19.0	2	94	0	58	44	0	55	0	0.99
588665--588705	20	2.0	20	100	0	82	39	0	60	0	0.96
590601--590640	18	2.2	18	100	0	80	25	7	22	45	1.78
590682--590715	2	17.0	2	93	0	59	50	0	2	47	1.16
590898--590930	15	2.1	16	88	5	50	54	0	0	45	0.99
590927--591044	26	4.5	26	69	18	75	57	0	0	42	0.98
590951--590984	17	1.9	18	88	5	52	44	0	0	55	0.99
598104--598133	2	15.0	2	100	0	60	50	0	0	50	1.00
603549--603575	8	3.4	8	100	0	54	40	11	22	25	1.87
604128--604177	9	5.3	10	78	9	52	68	2	0	30	1.01
616425--616481	27	2.0	27	86	13	78	42	1	0	56	1.10
616437--616490	20	2.7	19	77	11	54	40	1	0	57	1.09
616474--616505	16	2.0	16	93	0	55	40	0	0	59	0.97
616475--616546	20	3.4	20	72	12	63	31	1	0	66	1.00
617823--617860	16	2.3	17	81	4	51	42	10	0	47	1.38
618359--618397	19	2.1	19	85	0	51	33	5	0	61	1.18
619356--619405	25	2.0	26	84	4	66	54	0	0	46	1.00
619323--619397	33	2.3	34	77	8	86	49	0	0	50	1.00
621938--621986	21	2.3	21	79	6	55	48	2	0	48	1.12
621938--621986	11	4.7	10	79	5	53	48	2	0	48	1.12
623290--623335	14	3.2	15	75	12	51	45	0	0	54	0.99
623642--623676	15	2.3	15	90	0	52	34	11	0	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628753--628797	20	2.2	20	84	11	56	42	2	0	55	1.12
628748--628809	23	2.7	23	73	9	63	46	1	0	51	1.10
638432--638480	21	2.3	20	76	10	53	36	0	2	61	1.08
638508--638543	18	2.1	17	89	5	54	38	0	0	61	0.96
638494--638561	30	2.3	29	80	11	77	39	1	1	57	1.17
639316--639357	13	3.2	13	86	10	50	61	0	2	35	1.09
644979--645010	15	2.1	15	94	0	55	28	9	37	25	1.87
645351--645379	13	2.2	13	100	0	58	44	6	37	10	1.65
647962--648016	26	2.1	26	90	6	85	49	20	9	21	1.76
653890--653929	17	2.3	18	87	12	57	80	2	2	15	0.93
654229--654275	2	23.5	2	100	0	94	51	0	48	0	1.00
654422--654451	2	15.0	2	100	0	60	50	0	0	50	1.00
655408--655432	2	12.5	2	100	0	50	48	0	52	0	1.00
661243--661280	19	2.1	18	90	5	58	71	21	0	7	1.11
663418--663459	16	2.5	17	88	11	68	42	0	0	57	0.99
663454--663510	22	2.8	20	76	12	62	66	0	0	33	0.92
663462--663496	17	2.1	16	94	5	61	68	0	0	31	0.90
663525--663574	21	2.3	21	89	3	73	44	10	2	44	1.49
663534--663588	27	2.0	27	85	7	74	45	7	1	45	1.41
664031--664056	12	2.2	12	100	0	52	84	0	15	0	0.62
675070--675101	17	1.9	16	93	6	55	50	0	0	50	1.00
675588--675645	16	3.8	16	72	4	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677614--677848	117	2.0	117	98	0	452	25	21	17	34	1.95
679459--679541	42	2.0	42	83	4	105	53	1	1	44	1.16
679540--679582	17	2.5	17	85	11	52	72	4	0	23	1.04
679628--679666	19	2.1	19	95	0	69	38	20	17	23	1.93
685164--685199	16	2.2	16	100	0	72	0	19	22	58	1.40
686977--687011	2	17.5	2	100	0	70	48	0	0	51	1.00
688098--688123	12	2.2	12	100	0	52	7	0	92	0	0.39
691542--691575	11	3.0	11	91	4	50	0	14	2	82	0.79
696044--696157	17	6.3	17	66	20	61	49	0	0	50	1.00
696059--696099	17	2.3	17	91	8	64	48	0	0	51	1.00
696065--696129	23	2.9	23	72	19	57	53	0	0	46	1.00
698925--698970	22	2.1	22	83	0	56	63	4	21	10	1.44
699338--699409	34	2.1	34	97	2	137	59	2	20	16	1.49
699605--699642	20	1.9	20	89	10	60	39	0	2	57	1.12
699651--699710	5	11.8	5	73	16	52	61	0	0	38	0.96
699656--699757	11	9.5	12	69	19	57	57	0	0	41	1.05
699667--699737	22	3.2	24	75	16	66	59	0	1	39	1.06
699651--699712	33	1.9	32	87	9	90	62	0	0	37	0.95
699651--699743	40	2.4	38	78	13	102	59	0	1	39	1.05
700500--700544	18	2.4	18	82	10	56	35	0	0	64	0.94
701164--701233	31	2.3	30	85	4	88	40	2	0	57	1.14
707865--707907	21	2.1	21	86	4	61	69	2	0	27	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707913--707963	20	2.7	20	82	11	54	50	0	1	47	1.12
719517--719592	38	2.0	38	89	0	116	46	15	7	30	1.75
721277--721333	23	2.5	23	85	5	80	52	0	0	47	1.00
721548--721601	22	2.4	23	81	12	67	61	0	0	38	0.96
723648--723683	17	2.2	16	90	9	56	41	8	2	47	1.48
731445--731472	2	14.0	2	100	0	56	50	0	0	50	1.00
732568--732632	32	2.1	32	85	8	89	44	18	12	24	1.84
739206--739241	2	18.0	2	100	0	72	50	0	0	50	1.00
740780--740856	25	3.0	25	81	7	84	53	0	0	46	1.00
740821--740886	25	2.6	25	80	13	73	51	0	0	48	1.00
740847--740921	33	2.3	32	82	10	91	41	0	0	58	0.98
740847--740965	37	3.3	38	72	20	103	45	0	0	53	1.06
740933--740983	22	2.4	21	83	6	75	52	0	3	43	1.19
740973--741028	16	3.0	18	76	20	53	48	5	0	46	1.25
741027--741124	16	6.1	16	71	12	60	56	6	1	36	1.31
742891--742960	24	3.2	24	77	22	75	55	0	0	44	0.99
742911--742960	27	2.0	24	84	11	64	58	0	0	42	0.98
742895--742954	14	4.3	14	70	14	52	56	0	0	43	0.99
746721--746849	66	2.0	65	98	1	249	26	10	22	40	1.87
748592--748632	10	4.1	10	87	0	55	70	0	26	2	0.99
748592--748624	15	2.1	16	88	5	50	75	0	21	3	0.93
748592--748632	20	2.0	21	90	4	66	70	0	26	2	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752991--753057	25	2.7	26	75	13	70	43	1	2	52	1.25
761949--762007	22	2.7	21	77	17	57	38	0	0	61	0.96
761964--762009	21	2.1	22	88	8	67	41	0	0	58	0.98
761947--762009	20	3.0	22	77	11	69	39	0	0	60	0.97
764653--764683	2	15.5	2	100	0	62	51	0	48	0	1.00
766389--766418	2	15.0	2	100	0	60	50	0	0	50	1.00
770886--770912	2	13.5	2	100	0	54	48	0	0	51	1.00
771389--771460	24	3.2	22	76	18	69	58	2	0	38	1.13
772770--772800	3	10.3	3	100	0	62	67	0	32	0	0.91
773617--773649	2	16.5	2	100	0	66	51	0	0	48	1.00
776409--776459	18	2.7	18	79	14	59	64	0	0	35	0.94
776407--776462	17	2.9	19	82	15	71	64	0	0	35	0.94
776569--776630	19	3.0	21	76	6	56	33	0	0	66	0.92
780333--780386	2	27.0	2	84	0	72	46	0	5	48	1.25
784953--785024	23	3.0	23	81	4	72	48	0	1	50	1.09
784954--785014	23	2.6	25	82	10	74	44	0	1	54	1.10
785118--785155	20	1.9	20	89	10	60	39	0	0	60	0.97
785611--785675	25	2.7	25	76	9	73	55	0	3	41	1.15
789078--789371	159	1.8	160	87	0	437	38	13	17	31	1.88
789391--789422	12	2.4	14	90	10	50	37	15	12	34	1.85
794692--794721	3	10.0	3	100	0	60	66	0	0	33	0.92
795281--795348	23	3.0	22	78	16	75	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795292--795370	12	6.7	12	69	21	51	44	0	0	55	0.99
795871--795902	12	2.6	12	95	5	55	84	0	3	12	0.74
796124--796170	3	15.7	3	100	0	94	34	0	0	65	0.93
796361--796392	2	16.0	2	100	0	64	50	0	0	50	1.00
796523--796549	3	9.0	3	100	0	54	66	0	0	33	0.92
796562--796596	18	1.9	18	88	0	52	60	0	0	40	0.97
796559--796607	20	2.6	19	78	9	55	57	0	0	42	0.99
796765--796838	30	2.5	30	86	0	103	40	8	1	50	1.41
797198--797267	37	1.9	37	86	11	101	54	1	0	44	1.09
799994--800027	15	2.3	15	89	0	50	44	11	17	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13