Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold114
Parameters: 2 7 7 80 10 50 1000
Length:  3219552

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3200951--3200995
23
2.0
23
91
4
74
0
17
0
82
0.68
3201107--3201138
15
2.1
15
94
0
55
9
9
0
81
0.88
3203400--3203642
93
2.6
90
78
8
247
30
11
25
31
1.92
3208432--3208487
10
5.7
10
81
8
53
0
21
0
78
0.75
3208432--3208490
31
1.9
31
89
6
93
0
22
0
77
0.76
3208435--3208477
20
2.1
21
91
4
70
0
18
0
81
0.69
3212898--3212943
2
23.0
2
100
0
92
50
0
50
0
1.00
3213502--3213548
2
23.5
2
100
0
94
0
51
0
48
1.00
3213964--3214008
2
22.5
2
100
0
90
51
0
0
48
1.00
3216956--3217004
2
24.5
2
100
0
98
51
0
48
0
1.00
3217256--3217307
24
2.2
24
89
3
79
53
0
3
42
1.19
3217487--3219185
7
246.1
7
90
6
1920
4
2
53
40
1.33
3217746--3219485
7
253.3
7
86
9
1448
6
0
50
42
1.30
3219224--3219333
33
3.4
34
81
9
124
12
0
41
44
1.49
3217500--3219449
21
94.3
21
87
8
1731
5
2
51
41
1.35
3217500--3219482
14
143.4
14
87
8
1653
5
2
51
41
1.36
3219509--3219548
10
4.0
10
81
12
55
10
0
32
57
1.32
3219501--3219552
18
2.8
19
86
11
72
11
0
38
50
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!