genome.fa.s123.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold123
Parameters: 2 7 7 80 10 50 1000
Length:  1422801

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1028 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322862--1322928	37	1.9	35	88	11	102	32	11	25	29	1.92
1323187--1323304	52	2.3	52	89	2	184	32	17	19	30	1.95
1323293--1323317	13	1.9	13	100	0	50	36	16	16	32	1.90
1323384--1323408	13	1.9	13	100	0	50	32	16	16	36	1.90
1323362--1323428	33	2.0	33	88	0	98	40	13	11	34	1.81
1323845--1323869	13	1.9	13	100	0	50	40	12	16	32	1.84
1323921--1323975	20	2.6	22	86	8	71	34	16	0	49	1.46
1323897--1324134	111	2.1	112	85	2	309	35	16	8	39	1.80
1324060--1324186	51	2.5	51	89	0	173	29	18	11	40	1.85
1324155--1324207	20	2.7	20	87	0	70	32	24	3	39	1.73
1326551--1326861	79	3.9	78	86	2	388	27	25	12	35	1.92
1330264--1330357	20	4.7	20	94	2	154	35	20	10	34	1.87
1330488--1330541	21	2.6	21	100	0	108	37	14	18	29	1.91
1332065--1332111	2	22.5	2	87	8	67	46	4	2	46	1.34
1333206--1333240	17	2.1	17	100	0	70	45	0	20	34	1.51
1339387--1339445	22	2.5	25	76	20	65	44	1	0	54	1.10
1340842--1340897	20	2.7	21	80	5	69	37	12	12	37	1.81
1343808--1343863	19	2.9	19	89	2	76	33	16	14	35	1.88
1344774--1344840	33	2.0	33	85	0	89	29	17	28	23	1.97
1346305--1346342	13	2.9	13	96	0	67	36	15	15	31	1.90
1356634--1356778	26	5.3	26	62	21	64	29	30	17	22	1.97
1356558--1357226	55	11.8	57	86	6	723	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358037--1358063	13	2.1	13	100	0	54	37	14	14	33	1.88
1358104--1358128	13	1.9	13	100	0	50	32	16	16	36	1.90
1358137--1358264	52	2.5	52	92	3	206	32	17	17	31	1.94
1364534--1364595	14	4.3	15	77	8	51	83	8	8	0	0.80
1364535--1364612	27	2.9	25	78	16	77	82	6	11	0	0.85
1365738--1365877	27	5.1	27	61	19	74	29	29	18	22	1.98
1365578--1366252	55	12.0	58	88	6	775	26	28	20	23	1.99
1366139--1366226	26	3.3	26	64	14	70	26	30	20	22	1.98
1369969--1370050	15	5.9	14	73	15	64	81	7	10	0	0.86
1371011--1371596	55	10.4	54	87	5	663	27	27	20	24	1.99
1372465--1372521	21	2.7	21	97	0	105	33	10	19	36	1.86
1372577--1372659	19	4.9	19	68	27	78	34	9	15	39	1.80
1372598--1372622	13	1.9	13	100	0	50	36	16	16	32	1.90
1372578--1372659	32	2.5	33	88	9	123	35	9	15	39	1.81
1372699--1372724	13	2.0	13	100	0	52	30	15	15	38	1.88
1372679--1372745	33	2.0	33	88	0	98	25	14	16	43	1.86
1375076--1375468	52	7.5	53	68	15	183	29	25	12	32	1.92
1375190--1375265	27	2.8	27	88	9	102	22	34	22	21	1.97
1375457--1375528	28	2.6	28	84	0	81	22	31	19	26	1.97
1375079--1375574	263	1.9	263	87	3	739	28	25	13	32	1.94
1375482--1375684	77	2.6	79	79	3	214	24	29	17	29	1.97
1377928--1377982	20	2.8	20	88	0	83	40	14	12	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381959--1382014	20	2.8	20	100	0	112	26	16	14	42	1.86
1382889--1382946	20	3.0	20	79	2	64	36	17	13	32	1.89
1385074--1385111	15	2.5	15	86	0	58	57	2	7	31	1.41
1389160--1389184	13	1.9	13	100	0	50	32	20	16	32	1.94
1391590--1391642	19	2.7	20	85	2	72	35	16	15	32	1.90
1391664--1391716	20	2.7	20	90	0	79	26	13	22	37	1.91
1396290--1396345	19	2.9	19	91	2	85	35	17	16	30	1.92
1396330--1396356	13	2.1	13	100	0	54	40	14	14	29	1.86
1397438--1397499	31	2.0	31	96	0	115	46	9	8	35	1.66
1397684--1397730	20	2.4	19	89	3	67	25	17	17	40	1.90
1397684--1397735	19	2.7	20	87	3	70	25	19	17	38	1.93
1397778--1397802	13	1.9	13	100	0	50	36	16	16	32	1.90
1402285--1402352	32	2.1	33	86	2	93	39	11	10	38	1.76
1403776--1403838	32	2.0	32	93	0	108	31	14	11	42	1.80
1403869--1403933	33	2.0	32	85	11	87	33	13	18	33	1.90
1410231--1410280	21	2.4	22	83	9	61	32	20	0	48	1.50
1413205--1413253	23	2.1	23	100	0	98	28	18	12	40	1.86
1413864--1413889	13	2.0	13	100	0	52	38	15	15	30	1.88
1413846--1413909	32	2.0	33	90	3	103	42	15	14	28	1.86
1417952--1417982	15	2.1	15	93	0	53	48	16	22	12	1.80
1420065--1420102	13	2.9	13	92	0	58	36	18	13	31	1.89
1422626--1422695	19	4.0	17	75	22	65	44	15	12	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1422649--1422675	14	1.9	14	100	0	54	40	14	14	29	1.86
1422626--1422695	33	2.1	35	89	5	108	44	15	12	27	1.83

Tables:   1   2   3   4   5   6   7   8   9

The End!