genome.fa.s132.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold132
Parameters: 2 7 7 80 10 50 1000
Length:  2458301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1722 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250025--250069	2	23.0	2	86	4	65	46	0	2	51	1.13
255988--256036	26	2.0	26	88	11	77	59	0	0	40	0.98
257750--257786	2	18.5	2	94	0	65	48	2	0	48	1.15
260201--260235	2	17.5	2	87	0	52	0	45	2	51	1.16
260563--260607	17	2.9	16	87	9	58	51	0	0	48	1.00
260558--260604	17	2.5	19	73	16	53	53	0	0	46	1.00
261048--261146	5	21.2	5	66	24	56	62	0	0	37	0.95
261048--261126	13	6.5	13	80	14	73	64	0	0	35	0.94
262041--262080	15	2.4	18	88	12	59	37	0	10	52	1.35
262383--262431	14	3.4	15	81	16	59	44	2	0	53	1.12
262685--262751	16	4.2	15	78	19	55	38	0	0	61	0.96
262666--262748	31	2.6	32	80	17	86	37	0	0	62	0.95
262698--262751	16	3.4	17	76	19	62	37	0	0	62	0.95
262760--262797	20	1.9	19	89	5	58	39	0	0	60	0.97
264516--264545	2	15.0	2	100	0	60	50	0	0	50	1.00
266331--266469	69	2.0	67	84	2	179	53	6	10	30	1.60
266793--266832	17	2.2	17	86	13	53	42	0	0	57	0.98
267686--267733	19	2.9	15	75	24	51	62	0	0	37	0.95
267695--267745	25	2.0	26	84	3	68	58	0	0	41	0.98
267686--267746	18	3.4	18	72	20	56	59	0	0	40	0.98
267716--267793	11	6.4	12	71	25	58	53	0	0	46	1.00
267714--267796	42	2.0	42	86	9	116	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268636--268697	21	3.0	21	77	15	58	61	4	0	33	1.17
275574--275601	2	14.0	2	100	0	56	50	0	0	50	1.00
277615--277639	2	12.5	2	100	0	50	48	0	0	52	1.00
278015--278055	2	20.5	2	89	0	64	46	0	0	53	1.00
279443--279517	30	2.5	30	89	4	107	38	10	0	50	1.37
280906--280934	12	2.4	12	100	0	58	51	6	0	41	1.28
283752--283789	2	19.0	2	94	0	67	47	0	2	50	1.15
284506--284537	10	3.4	10	87	12	50	62	0	0	37	0.95
284520--284581	30	2.1	30	87	6	90	54	0	0	45	0.99
284516--284601	27	3.1	28	78	15	97	56	0	0	43	0.99
296759--296798	16	2.7	14	92	7	62	50	0	0	50	1.00
296767--296803	18	2.0	19	89	5	58	54	0	0	45	1.00
297218--297278	23	2.7	24	73	19	67	47	0	0	52	1.00
297272--297350	33	2.4	33	74	14	83	46	6	0	46	1.28
301522--301559	20	1.9	20	84	10	51	28	13	31	26	1.93
303590--303630	6	6.8	6	91	0	55	34	46	0	19	1.50
305256--305383	27	4.6	27	74	17	95	60	0	0	38	1.02
305256--305356	50	2.0	52	83	11	129	61	0	0	38	0.96
305307--305364	20	2.8	20	75	12	64	56	0	0	43	0.99
306655--306720	19	3.7	18	76	15	66	48	0	0	51	1.00
308169--308221	21	2.5	22	77	19	60	54	0	0	45	0.99
308167--308235	33	2.1	33	83	5	86	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308276--308335	19	3.2	18	73	17	52	36	0	0	63	0.95
308276--308330	20	2.8	19	81	5	65	36	0	0	63	0.95
308277--308373	23	4.2	23	79	10	83	42	0	1	56	1.06
309455--309544	24	3.7	24	75	13	67	54	0	0	45	0.99
309474--309524	25	2.0	25	88	7	77	52	0	0	47	1.00
309474--309543	26	2.8	25	80	10	72	54	0	0	45	0.99
310456--310481	2	13.0	2	100	0	52	50	0	0	50	1.00
310840--310896	24	2.4	23	77	11	62	47	1	3	47	1.29
311649--311682	13	2.6	13	90	0	50	47	2	0	50	1.16
312695--312735	13	3.1	14	80	13	52	53	0	0	46	1.00
312915--312939	7	3.6	7	100	0	50	16	0	0	84	0.63
313716--313777	16	3.8	16	72	18	56	41	0	0	58	0.98
313727--313775	19	2.6	19	75	15	57	40	0	0	59	0.98
317462--317490	2	15.0	2	92	7	51	48	0	0	51	1.00
318522--318546	2	12.5	2	100	0	50	48	0	0	52	1.00
319084--319179	48	2.0	48	97	0	183	34	8	21	35	1.84
320929--320956	2	14.0	2	100	0	56	50	0	0	50	1.00
323581--323631	21	2.4	21	80	0	57	52	0	0	47	1.00
323585--323639	15	3.6	15	78	9	58	56	0	0	43	0.99
323601--323655	25	2.1	26	83	10	67	52	0	0	47	1.00
326218--326253	14	2.6	14	91	4	56	38	0	0	61	0.96
329282--329314	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351719--351786	29	2.3	30	80	16	81	52	0	0	47	1.00
360535--360567	17	2.0	17	88	5	50	0	27	9	63	1.24
362718--362850	66	2.0	66	97	0	248	16	17	18	48	1.82
382002--382042	3	14.0	3	85	14	59	68	0	2	29	1.03
382591--382660	28	2.5	27	78	17	72	37	1	2	58	1.22
382646--382677	11	2.9	11	100	0	64	28	0	0	71	0.86
383503--383537	14	2.4	15	90	4	54	57	0	0	42	0.99
383864--383908	20	2.3	19	84	3	54	40	0	0	60	0.97
383902--383958	30	2.0	26	83	12	69	43	0	0	56	0.99
383922--383977	18	3.1	18	76	10	60	44	0	1	53	1.11
384463--384526	30	2.2	28	86	5	83	54	3	0	42	1.16
384474--384533	29	2.0	30	84	9	79	56	1	0	41	1.09
385490--385545	19	3.1	18	82	10	69	67	0	0	32	0.91
385515--385553	9	4.2	9	83	6	51	61	0	0	38	0.96
385561--385587	13	2.1	13	100	0	54	51	0	0	48	1.00
385833--385964	30	4.6	28	69	17	74	40	0	3	56	1.14
385877--385918	18	2.2	19	79	12	50	50	0	2	47	1.14
392180--392224	22	2.0	22	95	0	81	42	4	2	51	1.34
392949--392977	5	6.0	5	92	8	51	0	0	62	37	0.96
393136--393188	18	2.8	19	73	21	58	45	0	0	54	0.99
393137--393203	35	1.9	35	82	11	84	44	0	0	55	0.99
395828--395869	22	1.9	22	85	9	59	35	35	2	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397197--397242	6	7.8	6	92	2	76	54	0	28	17	1.43
397362--397409	15	3.2	14	82	11	51	75	0	4	20	0.97
397485--397573	14	6.5	13	69	20	56	53	0	1	44	1.07
397484--397605	28	4.4	28	72	16	83	53	0	0	45	1.06
397545--397593	18	3.0	18	75	19	54	53	0	0	46	1.00
397530--397622	31	2.9	32	75	19	88	51	0	0	48	1.00
398085--398170	20	3.8	22	73	21	72	38	1	2	58	1.19
398634--398696	33	1.9	33	83	6	83	36	1	3	58	1.23
399121--399160	15	2.7	16	81	14	50	42	0	0	57	0.98
399137--399189	15	3.7	15	78	12	67	45	0	0	54	0.99
400242--400434	104	1.9	102	82	5	237	45	7	5	42	1.54
400725--400776	27	1.9	27	84	7	70	57	3	0	38	1.17
401330--401398	30	2.3	30	89	0	102	39	8	1	50	1.42
402015--402281	132	2.0	133	89	5	414	39	12	10	37	1.77
403005--403038	11	3.1	11	91	0	50	35	8	0	55	1.31
405377--405419	11	3.6	11	79	14	50	65	0	0	34	0.93
405362--405419	25	2.3	25	85	8	73	62	0	0	37	0.96
406356--406397	2	21.0	2	100	0	84	50	0	0	50	1.00
408353--408404	25	2.1	26	82	7	63	5	9	7	76	1.14
412744--412790	20	2.3	21	85	3	60	38	0	36	25	1.56
415206--415273	22	3.0	22	75	12	59	35	0	0	64	0.94
415216--415275	22	2.7	23	78	17	63	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415216--415275	23	2.6	22	80	12	68	36	0	0	63	0.95
419387--419697	155	2.0	155	94	0	541	43	14	19	22	1.87
426199--426231	2	16.5	2	100	0	66	51	0	0	48	1.00
427878--427932	19	2.8	19	83	13	67	40	0	0	60	0.97
428051--428086	17	2.2	17	90	5	56	52	0	5	41	1.24
428242--428304	12	5.2	12	75	3	54	28	3	3	65	1.24
429470--429500	16	2.0	16	93	6	55	64	0	0	35	0.94
429991--430056	29	2.2	31	78	5	73	51	3	1	43	1.26
431481--431529	18	2.6	18	87	6	62	71	2	2	24	1.07
431961--432050	26	3.5	26	72	27	84	43	0	1	55	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15