genome.fa.s132.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold132
Parameters: 2 7 7 80 10 50 1000
Length:  2458301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  3  of  15  ( 1722 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433189--433215	2	13.5	2	100	0	54	51	0	0	48	1.00
434619--434686	5	13.2	5	71	17	50	63	0	0	36	0.95
434617--434715	27	3.8	25	79	14	94	60	1	0	38	1.04
435565--435589	6	4.2	6	100	0	50	0	16	68	16	1.22
435864--435924	21	2.9	20	74	16	61	54	0	1	44	1.10
436625--436660	3	12.0	3	93	0	63	30	0	0	69	0.89
440536--440588	14	3.9	14	71	24	51	77	0	9	13	0.99
440533--440589	26	2.1	28	84	12	75	73	0	8	17	1.07
440719--440751	2	16.5	2	100	0	66	0	48	0	51	1.00
441812--441837	6	4.3	6	100	0	52	0	0	15	84	0.62
446481--446587	39	2.9	37	79	10	103	46	0	0	52	1.06
446522--446585	21	3.2	20	70	14	60	51	0	0	48	1.00
446527--446592	18	3.5	18	71	18	53	51	0	0	48	1.00
446999--447058	14	4.5	13	72	24	54	55	1	0	43	1.10
447282--447328	18	2.4	19	80	20	53	38	0	0	61	0.96
447671--447719	11	4.4	11	82	12	55	51	0	0	48	1.00
447673--447711	13	3.2	12	86	10	53	43	0	0	56	0.99
453401--453444	18	2.4	19	81	7	56	52	0	0	47	1.00
453437--453495	19	3.0	20	78	9	59	62	0	0	37	0.95
453421--453482	32	2.0	30	87	12	90	59	0	0	40	0.97
454024--454053	2	15.0	2	100	0	60	50	0	0	50	1.00
454095--454135	13	3.2	13	83	10	57	68	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454096--454149	26	2.0	27	85	3	74	61	0	1	37	1.07
455360--455390	2	15.5	2	100	0	62	51	0	0	48	1.00
456211--456284	30	2.5	29	82	6	85	51	1	2	44	1.24
456468--456528	18	3.2	19	77	15	63	52	0	1	45	1.10
456697--456759	31	2.0	31	93	0	108	41	6	9	42	1.63
456747--456831	22	4.0	22	66	23	65	38	1	3	56	1.24
456721--456804	41	2.1	40	86	6	116	39	3	5	51	1.44
456733--456836	41	2.6	40	82	11	115	37	2	4	54	1.36
456901--456993	39	2.4	38	79	12	100	50	5	4	39	1.45
457103--457170	29	2.4	30	82	7	88	58	4	0	36	1.18
457105--457179	30	2.5	30	80	10	82	56	4	0	40	1.18
457219--457287	32	2.1	33	84	7	88	44	2	7	44	1.46
457236--457311	32	2.4	31	83	14	93	35	1	9	53	1.41
457325--457368	16	2.9	16	81	18	58	38	2	0	59	1.10
457549--457581	7	4.9	7	88	7	50	66	0	0	33	0.92
457811--457849	18	2.1	18	85	4	51	46	0	5	48	1.24
470216--470254	19	2.1	19	85	0	51	38	15	17	28	1.91
470503--470659	50	3.2	50	80	5	201	36	18	14	30	1.90
472774--472821	17	2.7	17	82	17	62	50	0	2	47	1.12
473608--473646	21	1.9	20	89	5	60	38	15	10	35	1.81
482545--482578	15	2.1	16	89	10	52	47	0	0	52	1.00
482532--482576	23	2.0	23	90	0	72	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487939--487990	24	2.2	24	82	0	59	7	25	7	59	1.51
488632--488693	26	2.4	25	76	19	74	61	0	0	38	0.96
488637--488668	16	2.0	16	93	0	55	65	0	0	34	0.93
494738--494769	15	2.2	14	94	5	55	43	21	9	25	1.82
505802--505832	2	15.5	2	100	0	62	51	0	0	48	1.00
507363--507390	4	7.0	4	100	0	56	50	25	0	25	1.50
507692--507716	3	8.3	3	100	0	50	68	0	0	32	0.90
509262--509299	20	2.0	20	89	5	60	52	0	0	47	1.00
509322--509386	17	3.4	20	75	16	66	50	0	0	49	1.00
509372--509396	5	5.0	5	100	0	50	40	0	0	60	0.97
510479--510539	23	2.8	23	81	18	78	65	0	3	31	1.09
510522--510590	32	2.1	33	91	2	113	55	2	0	42	1.15
514196--514229	13	2.7	13	90	4	52	58	0	0	41	0.98
515668--515699	2	16.0	2	100	0	64	50	50	0	0	1.00
515699--515733	2	17.0	2	94	5	61	48	2	0	48	1.16
519014--519067	5	10.4	5	78	6	54	35	0	0	64	0.94
520855--520907	18	3.1	18	79	15	58	33	1	0	64	1.05
529567--529619	22	2.4	21	81	12	61	45	0	0	54	0.99
529589--529622	15	2.2	16	89	5	52	35	0	0	64	0.94
536615--536674	11	5.6	11	75	13	63	26	1	1	70	1.07
537453--537493	2	20.5	2	100	0	82	51	0	0	48	1.00
538545--538602	24	2.3	26	91	5	93	32	25	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538592--538657	27	2.4	27	89	0	96	24	10	19	45	1.82
538619--538688	24	2.8	24	77	14	70	21	10	22	45	1.81
544773--544838	34	2.0	33	87	3	96	31	7	7	53	1.57
548116--548178	21	3.0	21	73	0	54	31	25	19	23	1.98
551349--551389	19	2.2	19	95	0	73	26	29	12	31	1.92
551628--551723	48	2.0	48	100	0	192	41	12	18	27	1.86
555400--555449	23	2.1	24	82	10	59	52	0	0	48	1.00
555474--555529	22	2.4	25	72	27	61	57	0	3	39	1.16
557263--557309	10	4.8	10	76	5	51	29	2	0	68	1.02
557555--557584	12	2.5	12	94	0	51	10	0	3	86	0.67
558880--558920	17	2.5	17	88	11	59	17	0	12	70	1.16
561422--561735	89	3.5	89	83	0	333	40	12	14	32	1.83
562848--562877	16	1.9	15	93	6	51	43	0	3	53	1.17
563000--563065	16	4.1	16	80	5	71	63	1	0	34	1.04
563755--563788	14	2.5	14	90	4	52	79	0	14	5	0.91
564209--564233	5	5.0	5	100	0	50	20	0	0	80	0.72
568777--568825	3	16.3	3	100	0	98	32	0	0	67	0.91
569125--569151	13	2.1	13	100	0	54	18	7	22	51	1.70
580302--580347	21	2.1	22	84	4	58	19	30	19	30	1.97
582800--582838	20	2.0	20	89	0	60	41	5	41	12	1.65
582927--582992	27	2.4	27	79	2	69	50	15	4	30	1.64
590941--590988	24	2.0	24	88	4	71	64	0	4	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591403--591447	18	2.4	18	82	14	56	48	0	0	51	1.00
591411--591446	16	2.1	16	90	10	54	44	0	0	55	0.99
591466--591512	25	2.0	25	84	16	64	57	4	2	36	1.30
596737--596771	12	2.9	12	95	0	61	88	0	0	11	0.51
596737--596769	17	1.9	17	93	0	57	87	0	0	12	0.53
597415--597633	34	6.5	33	80	9	244	41	26	7	24	1.82
597417--597633	68	3.2	68	84	1	285	41	25	7	24	1.82
597415--597633	102	2.2	101	86	1	321	41	26	7	24	1.82
602041--602259	34	6.5	33	80	8	235	41	25	7	26	1.81
602043--602259	68	3.2	68	82	3	267	41	24	7	26	1.81
602041--602259	102	2.2	101	85	3	305	41	25	7	26	1.81
606083--606134	19	2.8	18	82	5	59	30	0	1	67	1.02
615425--615475	23	2.2	23	86	10	68	66	0	1	31	1.03
616081--616112	17	1.9	17	93	6	57	62	3	9	25	1.40
616357--616421	30	2.2	30	83	5	78	63	0	3	33	1.10
616360--616417	11	5.1	11	80	14	55	63	0	3	32	1.11
616414--616471	20	3.1	20	67	25	54	48	0	0	51	1.00
616672--616708	12	3.2	12	88	11	60	48	8	43	0	1.32
616865--616901	15	2.3	17	86	9	51	59	0	0	40	0.97
618052--618120	17	3.9	18	75	21	65	52	0	1	46	1.09
619756--619787	16	2.0	16	100	0	64	50	12	6	31	1.65
625698--625904	101	2.0	101	99	0	405	22	11	24	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627107--627169	32	2.0	32	90	6	101	38	6	12	42	1.68
627182--627312	63	2.0	64	89	8	203	36	12	13	37	1.83
627505--627662	79	2.0	77	81	6	185	27	11	14	46	1.79
630043--630126	36	2.4	35	82	7	109	52	9	10	27	1.67
634657--634689	4	8.8	4	87	12	52	78	0	0	21	0.75
634657--634689	7	4.4	8	92	7	52	78	0	0	21	0.75
637335--637421	24	3.9	23	67	28	53	35	1	4	58	1.26
644187--644228	21	2.0	21	100	0	84	38	9	14	38	1.78
644190--644237	21	2.3	21	88	0	69	45	10	8	35	1.68
648129--648194	31	2.1	31	94	0	114	36	21	7	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15