genome.fa.s132.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold132
Parameters: 2 7 7 80 10 50 1000
Length:  2458301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  5  of  15  ( 1722 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
854927--854995	29	2.5	29	78	19	85	40	0	0	59	0.97
859066--859099	2	16.5	2	93	6	59	47	0	2	50	1.16
864172--864206	17	2.1	17	89	10	54	48	0	0	51	1.00
864852--864891	3	13.3	3	100	0	80	67	0	0	32	0.91
872110--872141	2	16.0	2	93	0	55	46	0	0	53	1.00
872210--872236	2	13.5	2	100	0	54	48	0	0	51	1.00
872897--872962	21	3.2	20	78	8	60	40	0	1	57	1.08
873036--873079	21	2.1	21	83	8	54	27	2	2	68	1.14
876010--876034	13	1.9	13	100	0	50	40	8	28	24	1.83
880314--880370	25	2.3	25	81	3	71	50	0	0	49	1.00
880393--880469	36	2.2	36	81	6	86	59	1	1	37	1.14
887654--887706	15	3.6	15	74	5	54	41	0	0	58	0.98
893032--893077	4	11.5	4	95	0	83	28	0	23	47	1.52
894735--894778	20	2.0	22	83	12	56	56	4	2	36	1.32
899491--899525	7	4.9	7	89	3	52	57	0	0	42	0.99
899461--899549	29	3.1	29	78	13	78	59	1	0	39	1.05
901278--901302	2	12.5	2	100	0	50	48	0	0	52	1.00
908338--908374	19	1.9	19	88	0	56	51	0	0	48	1.00
908360--908410	26	1.9	27	84	4	68	50	0	0	49	1.00
908339--908437	43	2.2	45	82	8	114	55	0	0	44	0.99
908430--908460	16	1.9	16	93	0	53	64	0	0	35	0.94
909015--909075	6	10.2	6	76	13	54	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909030--909069	20	2.0	20	85	9	55	57	0	0	42	0.98
909018--909109	28	3.4	26	73	18	73	51	0	0	48	1.00
913201--913248	2	24.5	2	85	4	62	50	0	2	47	1.12
915632--915662	7	4.4	7	100	0	62	16	0	0	83	0.64
917996--918030	18	2.1	17	89	10	54	37	0	5	57	1.23
918580--918626	18	2.6	18	86	10	60	46	0	0	53	1.00
919794--919858	32	2.0	32	82	5	78	50	0	0	49	1.00
919820--919866	21	2.4	19	77	19	51	55	0	0	44	0.99
920824--920870	22	2.1	22	80	7	60	42	2	2	53	1.25
922357--922383	3	9.0	3	100	0	54	66	0	0	33	0.92
923464--923527	27	2.4	27	81	2	67	50	1	0	48	1.10
925413--925452	18	2.2	18	95	0	71	42	0	2	55	1.13
926642--926700	30	2.0	30	86	6	84	64	1	0	33	1.04
926741--926784	19	2.4	19	85	11	56	50	13	6	29	1.68
927065--927089	2	12.5	2	100	0	50	52	0	0	48	1.00
927572--927609	18	2.2	18	86	13	53	39	2	13	44	1.57
928433--928480	25	1.9	25	83	8	62	45	0	0	54	0.99
932995--933106	33	3.4	33	72	16	97	40	0	2	57	1.13
933047--933121	33	2.2	35	81	11	84	45	1	0	53	1.08
934410--934440	15	2.1	15	100	0	62	41	19	6	32	1.77
934604--934634	15	2.1	15	94	5	55	48	0	0	51	1.00
934598--934636	14	2.9	13	85	14	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936223--936313	29	3.3	29	72	17	86	47	0	1	51	1.07
936235--936322	23	3.4	27	76	19	80	50	0	1	48	1.08
939453--939494	22	1.9	22	90	0	66	52	0	0	47	1.00
943228--943365	73	1.9	72	95	1	249	48	5	2	44	1.36
944404--944452	14	3.3	15	74	23	50	46	0	2	51	1.12
944405--944470	28	2.3	29	82	10	82	46	0	1	51	1.10
947576--947612	19	1.9	19	89	10	58	54	0	0	45	1.00
947574--947634	21	3.0	21	79	11	58	52	0	0	47	1.00
947715--947744	10	3.0	10	95	0	51	46	0	3	50	1.18
948267--948296	2	15.0	2	92	0	51	46	0	3	50	1.18
949792--949830	17	2.3	17	86	0	51	38	0	0	61	0.96
949823--949863	16	2.4	18	84	12	59	34	0	0	65	0.93
949841--949892	13	4.2	12	79	11	61	32	0	1	65	1.04
949838--949888	25	2.1	24	89	10	77	27	0	1	70	0.98
949968--950035	30	2.3	28	78	16	66	35	2	0	61	1.11
949983--950039	30	1.9	29	89	10	89	38	1	0	59	1.08
949988--950046	30	2.1	28	87	9	84	40	1	1	55	1.20
950544--950590	24	1.9	25	87	12	71	59	2	0	38	1.09
950540--950604	30	2.2	28	78	7	67	60	1	0	38	1.07
950715--950765	25	2.0	25	81	7	59	49	0	1	49	1.12
950801--950831	16	1.9	16	100	0	62	64	0	0	35	0.94
950887--950914	10	2.8	10	100	0	56	21	28	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951052--951080	3	9.7	3	100	0	58	65	0	0	34	0.93
951083--951116	3	11.3	3	93	0	59	35	2	0	61	1.11
951219--951288	35	2.0	35	88	0	104	55	1	0	42	1.08
951218--951278	18	3.4	18	65	4	52	60	1	0	37	1.07
954090--954138	22	2.3	21	78	3	53	59	10	30	0	1.31
958594--958627	17	2.0	16	88	11	50	14	2	0	82	0.79
958810--958868	29	2.0	29	83	6	75	32	0	0	67	0.91
958840--958871	16	2.0	16	93	0	55	40	0	0	59	0.97
958884--958935	25	2.0	25	85	3	68	32	0	0	67	0.91
960396--960465	22	3.3	21	76	13	72	47	1	0	51	1.09
962697--962760	30	2.1	30	85	0	83	43	6	1	48	1.37
962797--962837	21	2.0	21	85	0	55	53	0	0	46	1.00
963107--963139	2	16.5	2	100	0	66	48	0	0	51	1.00
963673--963703	13	2.4	13	94	0	53	61	0	0	38	0.96
964235--964267	9	3.6	9	95	4	57	0	15	0	84	0.61
964849--964902	28	1.9	28	88	0	81	51	0	0	48	1.00
964913--964955	21	2.0	20	83	16	52	48	0	0	51	1.00
965448--965496	24	2.0	24	84	8	62	36	0	4	59	1.17
966249--966286	17	2.2	17	86	9	51	60	0	0	39	0.97
966247--966313	25	2.7	25	77	13	68	55	0	0	44	0.99
966784--966813	12	2.5	12	94	0	51	73	6	20	0	1.05
969614--969640	2	13.5	2	100	0	54	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974375--974432	30	1.9	31	86	10	84	51	0	0	48	1.00
974383--974476	42	2.2	41	80	19	97	51	0	0	48	1.00
975730--975764	3	11.7	3	100	0	70	31	0	0	68	0.90
975825--975883	23	2.5	24	81	10	77	49	1	0	49	1.11
975825--975884	24	2.6	22	79	10	66	48	1	0	50	1.11
976232--976321	46	2.0	45	82	12	112	48	0	1	50	1.08
976681--976814	22	5.9	22	70	14	76	35	0	0	64	0.99
976681--976725	24	2.0	24	91	8	76	28	0	0	71	0.87
976731--976778	14	3.1	14	76	21	51	45	0	0	54	0.99
976722--976813	27	3.3	27	72	23	84	36	0	1	61	1.03
976759--976812	23	2.4	22	81	12	56	37	0	0	62	0.95
977127--977184	14	3.9	14	75	16	53	46	0	0	53	1.00
977127--977180	16	3.4	16	72	10	56	50	0	0	50	1.00
977987--978071	44	1.9	44	92	0	143	36	9	10	43	1.72
978117--978151	2	17.5	2	100	0	70	51	0	0	48	1.00
979129--979197	23	3.0	22	76	15	70	46	0	0	53	1.00
979133--979218	35	2.7	31	77	12	84	45	0	1	53	1.07
979575--979603	10	3.0	10	95	5	51	48	0	0	51	1.00
979687--979717	16	1.9	16	100	0	62	41	0	6	51	1.27
980312--980367	17	3.2	17	84	5	58	58	0	0	41	0.98
980326--980367	19	2.2	19	83	8	50	54	0	0	45	0.99
983599--983623	3	8.3	3	100	0	50	68	32	0	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983978--984006	2	14.5	2	100	0	58	48	0	0	51	1.00
985406--985622	109	2.0	109	90	0	344	30	8	19	41	1.82
986616--986686	31	2.3	31	87	0	97	25	15	23	35	1.94
989782--989821	14	2.9	15	82	14	50	42	7	0	50	1.30
992996--993066	35	2.0	33	81	13	79	53	0	0	46	1.00
995023--995091	29	2.3	30	80	9	79	40	1	0	57	1.07
995705--995741	20	1.9	20	88	5	58	32	0	0	67	0.91
995705--995747	20	2.2	20	84	8	54	34	0	0	65	0.93
995727--995795	30	2.3	30	87	0	102	40	1	0	57	1.07
995963--996013	20	2.6	19	78	9	57	31	0	1	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15