genome.fa.s143.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold143
Parameters: 2 7 7 80 10 50 1000
Length:  1221646

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 905 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302990--303247	79	3.3	79	86	2	286	27	27	14	31	1.95
302792--303082	158	1.8	158	84	1	395	27	27	13	32	1.94
303355--305032	863	1.9	858	87	3	2411	29	21	16	32	1.95
306297--306468	27	6.0	30	79	7	112	23	28	13	34	1.92
306315--306486	55	3.1	55	82	5	211	22	28	14	34	1.94
306334--306486	27	5.6	27	85	3	198	22	29	14	33	1.94
306395--306516	55	2.2	55	83	0	145	25	29	16	28	1.97
306495--306933	58	7.7	57	82	4	454	31	25	17	25	1.97
306495--306933	28	15.3	29	84	4	473	31	25	17	25	1.97
306495--306933	87	5.1	84	84	4	477	31	25	17	25	1.97
306628--306948	29	11.0	29	86	5	256	30	24	17	27	1.97
308188--308250	32	1.9	33	87	9	94	31	15	15	36	1.90
308216--308274	20	3.0	20	78	7	68	38	16	15	28	1.89
308301--308354	20	2.7	20	85	8	74	35	14	18	31	1.91
314484--314519	13	2.8	13	86	0	54	27	13	16	41	1.87
316002--316068	33	2.0	33	82	0	80	25	31	16	26	1.96
316355--316407	21	2.2	25	81	18	69	49	5	24	20	1.71
316962--317026	20	3.6	20	73	26	81	29	15	15	40	1.88
316982--317039	13	4.9	13	70	23	56	32	15	15	36	1.89
316961--317058	33	3.0	33	94	4	164	30	15	15	38	1.88
317028--317081	19	2.8	19	94	0	90	33	14	16	35	1.90
317125--317153	13	2.2	13	100	0	58	41	17	13	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321513--321606	44	2.1	44	98	0	179	14	18	18	48	1.81
321513--321620	44	2.5	44	92	0	162	15	18	17	48	1.82
322286--322386	52	1.9	52	91	0	166	26	13	27	31	1.94
322202--322474	141	1.9	141	93	0	465	26	21	20	31	1.98
322338--322507	89	1.9	89	85	0	232	27	23	17	31	1.96
322355--322536	89	2.0	89	81	0	211	28	24	14	31	1.95
322722--323067	44	7.8	44	74	8	281	22	23	14	40	1.90
322730--322964	90	2.6	88	80	10	253	21	22	14	41	1.90
322721--322976	134	1.9	132	86	4	363	21	22	14	41	1.90
323220--324604	42	32.9	42	72	10	683	18	29	17	34	1.94
323224--324434	168	7.2	168	78	4	904	18	29	17	34	1.94
323220--324635	84	16.8	84	77	5	812	18	29	17	34	1.94
325200--325258	26	2.2	27	85	8	77	69	0	1	28	0.98
325335--325417	17	4.9	17	87	0	121	18	20	10	50	1.76
325336--325417	34	2.4	34	93	0	146	18	20	10	50	1.77
325789--325832	20	2.3	18	81	14	52	81	4	9	4	0.96
325919--325988	23	3.2	23	80	6	83	57	25	11	5	1.56
331543--331581	20	2.0	19	95	5	69	35	23	10	30	1.88
331591--331615	13	1.9	13	100	0	50	32	16	16	36	1.90
331715--331740	13	2.0	13	100	0	52	38	15	15	30	1.88
335908--335933	13	2.0	13	100	0	52	30	15	15	38	1.88
337427--337495	28	2.5	27	81	6	84	42	17	20	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338110--338189	33	2.4	33	87	4	106	28	28	16	26	1.97
338495--338889	156	2.5	158	84	2	483	25	23	15	35	1.94
338432--338869	52	8.4	53	76	7	394	25	23	14	36	1.93
339570--339621	20	2.5	20	84	3	59	42	9	15	32	1.79
344411--344539	52	2.5	52	93	0	231	29	18	17	34	1.94
344617--344700	13	5.5	13	71	28	60	35	17	13	33	1.89
344625--344687	19	3.7	18	76	24	73	36	17	12	33	1.88
344617--344702	32	2.7	32	96	0	163	37	17	12	32	1.88
345736--345832	20	5.6	20	68	30	87	30	17	19	31	1.95
345755--345819	13	5.5	12	72	27	59	30	16	18	33	1.94
345737--345832	33	2.9	33	98	0	183	30	17	19	32	1.95
345864--345919	19	2.9	19	86	2	67	35	14	16	33	1.88
346964--347201	94	2.5	96	80	6	216	28	20	12	38	1.89
349709--349748	20	2.0	20	90	0	62	40	15	25	20	1.90
354459--354858	165	2.4	165	78	7	393	30	9	8	51	1.65
358432--358474	21	2.0	21	86	8	61	74	0	16	9	1.06
358520--363452	986	5.0	987	98	0	9249	38	13	14	32	1.86
364304--364394	35	2.6	34	78	10	96	32	19	9	37	1.85
367384--367417	18	1.9	17	88	5	50	2	14	0	82	0.79
367401--367431	13	2.5	12	90	10	53	0	19	3	77	0.90
367822--368660	166	5.1	166	82	5	880	52	7	9	31	1.60
368394--368444	20	2.7	20	79	14	54	70	3	5	19	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367822--368699	333	2.7	332	81	6	921	51	7	9	31	1.62
371131--371250	51	2.4	51	84	0	168	32	12	25	30	1.92
370974--371281	129	2.4	129	80	5	354	35	13	24	27	1.93
371297--371407	51	2.2	51	75	6	118	34	13	23	28	1.93
371368--371590	76	2.9	76	87	2	324	31	14	27	26	1.95
371578--371739	51	3.2	50	85	5	191	30	12	27	29	1.93
374118--374144	13	2.1	13	100	0	54	29	14	14	40	1.86
374807--374902	42	2.3	42	80	8	108	42	11	29	16	1.83
374905--375057	42	3.5	43	80	9	152	38	14	26	20	1.91
375044--375326	55	4.8	61	82	10	344	24	20	28	26	1.99
375365--376323	61	15.8	61	74	12	605	26	20	27	25	1.99
375371--376323	122	7.9	120	71	13	674	26	20	27	25	1.99
375726--375899	94	1.8	95	93	1	305	25	21	27	26	1.99
375664--376084	151	2.7	150	87	4	585	27	20	27	24	1.99
375845--375956	57	2.0	57	92	0	188	28	21	22	27	1.99
375044--376324	609	2.1	611	88	5	1909	26	20	27	25	1.99
376445--376530	28	3.1	28	65	9	77	27	19	24	27	1.99
376371--376777	61	6.8	61	83	8	479	27	19	26	26	1.99
376896--377066	85	2.0	85	95	0	306	29	11	27	30	1.92
377958--378015	11	5.0	11	84	12	71	0	5	10	84	0.77
377958--378014	13	4.6	12	84	4	69	0	5	8	85	0.72
382574--382640	37	1.9	35	88	11	102	29	25	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383313--383357	22	2.1	21	84	8	56	22	15	6	55	1.63
383302--383357	21	2.7	21	75	13	62	23	14	7	55	1.63
386076--386117	21	2.0	21	85	0	57	23	28	4	42	1.74
386633--386723	13	7.0	13	92	0	155	35	18	15	30	1.92
386633--386723	26	3.5	26	100	0	182	35	18	15	30	1.92
386794--386849	21	2.6	22	94	5	105	37	10	25	26	1.88
386837--386867	10	3.1	10	90	0	53	41	6	29	22	1.78
386891--387027	53	2.6	53	95	1	247	27	17	18	37	1.93
386997--387067	20	3.5	20	77	11	74	29	14	16	39	1.88
387107--387147	21	2.0	21	85	9	57	39	9	12	39	1.76
388766--388790	13	1.9	13	100	0	50	32	16	16	36	1.90
389328--389368	21	2.0	21	85	9	57	39	9	12	39	1.76
397943--398018	28	2.7	28	89	0	107	26	21	31	21	1.98
398008--398117	51	2.2	51	81	3	141	32	12	24	30	1.92
398078--398300	76	2.9	76	89	0	331	30	15	27	26	1.96
398284--398460	51	3.5	51	84	7	193	32	11	27	27	1.92
400859--400958	42	2.4	42	81	8	116	42	11	29	18	1.84
400926--400994	35	2.1	33	86	13	97	39	15	23	21	1.92
400893--401113	87	2.7	83	77	15	196	38	14	28	18	1.91
400949--401113	42	3.8	43	80	12	171	40	14	27	18	1.89
400855--401071	120	1.8	117	81	10	271	40	14	25	19	1.90
401096--401402	55	5.3	55	76	11	242	24	22	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401260--401382	62	2.0	62	88	3	185	28	19	26	25	1.99
404021--404047	13	2.1	13	100	0	54	29	14	14	40	1.86
404097--404163	33	2.0	33	88	5	100	37	13	16	32	1.88
406208--406255	15	3.1	16	79	11	55	50	4	14	31	1.62
407843--407898	19	2.8	20	86	2	78	37	14	16	32	1.88
407883--407909	13	2.1	13	100	0	54	40	14	14	29	1.86
413690--413761	35	2.1	35	91	0	117	25	22	12	40	1.89
416507--416576	20	3.5	20	98	0	131	31	20	7	41	1.79
416565--416589	13	1.9	13	100	0	50	32	16	16	36	1.90
416543--416609	33	2.1	31	83	13	82	31	17	13	37	1.89

Tables:   1   2   3   4   5   6   7   8