genome.fa.s143.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold143
Parameters: 2 7 7 80 10 50 1000
Length:  1221646

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 905 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037960--1038170	28	7.5	28	80	1	208	24	15	28	32	1.95
1037960--1038170	56	3.8	56	82	1	235	24	15	28	32	1.95
1055976--1056296	129	2.5	130	89	2	475	44	13	10	31	1.78
1057262--1057294	15	2.2	15	89	10	50	3	21	0	75	0.93
1057261--1057301	22	1.9	22	85	5	57	2	19	0	78	0.87
1057981--1058020	18	2.2	19	86	4	55	47	2	7	42	1.45
1057961--1058269	167	1.9	167	83	3	408	52	7	11	28	1.65
1064143--1064192	20	2.4	21	80	3	57	42	10	16	32	1.81
1064228--1064365	51	2.7	52	86	1	197	28	14	15	41	1.86
1064228--1064365	52	2.7	50	85	5	186	28	14	15	41	1.86
1070013--1070154	70	2.0	70	87	0	203	42	11	17	28	1.83
1072531--1072749	79	2.8	79	88	0	312	32	12	23	30	1.92
1072608--1072876	130	2.1	129	82	6	323	33	11	23	30	1.91
1072649--1072910	130	2.0	127	79	8	278	36	11	22	29	1.89
1075187--1075280	20	4.7	20	94	2	154	42	14	17	25	1.87
1075296--1075350	20	2.8	20	88	0	92	43	10	16	29	1.82
1080293--1080361	20	3.5	20	77	15	72	31	17	14	36	1.90
1082479--1107543	657	38.4	657	83	3	26732	30	17	22	29	1.97
1082495--1103858	329	65.4	327	81	4	20408	30	17	22	29	1.96
1100958--1107543	973	6.8	967	84	5	7210	29	17	22	29	1.97
1103859--1107543	328	11.3	328	81	4	4099	30	17	22	29	1.97
1107850--1107904	19	2.8	20	80	8	67	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114930--1115001	17	4.1	17	72	11	65	33	1	31	33	1.67
1114926--1115000	37	2.1	36	90	5	116	33	1	32	33	1.67
1115958--1116054	19	5.8	18	68	31	81	31	13	16	38	1.87
1116010--1116036	13	2.1	13	100	0	54	29	14	14	40	1.86
1115960--1116062	32	3.2	32	92	0	170	32	13	17	36	1.89
1116107--1116131	13	1.9	13	100	0	50	32	16	16	36	1.90
1116140--1116268	52	2.5	52	94	0	231	35	19	17	27	1.94
1120070--1131294	329	34.4	327	80	5	10573	30	17	22	28	1.97
1132126--1132150	13	1.9	13	100	0	50	36	16	16	32	1.90
1132109--1132171	33	1.9	32	87	3	90	30	15	20	33	1.94
1134662--1134711	26	1.9	26	87	0	73	42	16	10	32	1.81
1134676--1134711	13	2.8	13	91	0	54	38	19	11	30	1.86
1140869--1140894	13	2.0	13	100	0	52	38	15	15	30	1.88
1140847--1140914	33	2.1	32	89	8	102	33	16	16	33	1.91
1140983--1141008	13	2.0	13	100	0	52	38	15	15	30	1.88
1140966--1141028	32	1.9	33	90	3	101	31	15	20	31	1.94
1142064--1142120	20	2.8	20	83	0	69	38	14	15	31	1.87
1142106--1142134	13	2.2	13	100	0	58	31	17	13	37	1.89
1142122--1142174	20	2.6	21	84	3	72	39	15	16	28	1.89
1148487--1148527	22	2.0	20	86	13	57	31	21	4	41	1.74
1150782--1150838	20	2.8	20	83	0	69	38	14	15	31	1.87
1150840--1150892	20	2.6	21	81	3	63	39	13	16	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150933--1150959	13	2.1	13	100	0	54	29	14	14	40	1.86
1152323--1152574	79	3.2	78	84	3	319	33	14	25	26	1.94
1152431--1152754	127	2.5	128	84	4	418	32	12	26	28	1.93
1152639--1152805	51	3.3	50	87	3	210	32	11	25	29	1.92
1155034--1155140	20	5.7	19	78	18	109	41	14	15	28	1.86
1155054--1155123	33	2.1	33	97	0	131	40	14	17	28	1.88
1155034--1155140	53	2.0	53	87	7	155	41	14	15	28	1.86
1155073--1155103	13	2.4	13	100	0	62	38	16	16	29	1.90
1155446--1156383	330	2.8	327	84	3	1155	29	17	24	28	1.97
1157022--1157321	153	2.0	153	91	1	485	29	19	29	21	1.98
1157170--1158896	328	5.4	326	80	7	1808	30	17	24	28	1.97
1157177--1158896	640	2.7	633	83	7	1977	30	17	24	28	1.97
1158776--1159068	153	1.9	153	93	0	505	30	20	27	20	1.98
1158929--1161339	329	7.5	329	82	5	2751	30	17	23	28	1.97
1161189--1161492	153	2.0	152	90	1	475	28	18	30	22	1.97
1161341--1163445	328	6.5	327	80	6	2328	29	16	24	29	1.97
1162607--1163445	330	2.6	325	83	4	1094	30	17	23	28	1.97
1163291--1163598	153	2.0	153	95	0	553	26	19	31	22	1.97
1163812--1221639	329	176.0	327	80	6	54164	30	17	22	29	1.97
1166878--1166905	7	4.0	7	100	0	56	28	0	0	71	0.86
1208638--1208890	131	1.9	132	86	2	357	41	12	20	25	1.87

Tables:   1   2   3   4   5   6   7   8

The End!