genome.fa.s148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold148
Parameters: 2 7 7 80 10 50 1000
Length:  1464219

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 1072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1585--1610	2	13.0	2	100	0	52	50	0	0	50	1.00
4165--4189	13	1.9	13	100	0	50	40	8	4	48	1.51
4573--4597	13	1.9	13	100	0	50	8	16	24	52	1.70
8022--8064	23	1.9	22	85	4	59	30	0	0	69	0.88
15906--15945	16	2.5	16	95	0	71	45	12	0	42	1.42
16923--16957	17	2.1	17	100	0	70	34	37	0	28	1.58
19087--19123	19	1.9	19	100	0	74	27	8	27	37	1.84
19771--19888	57	2.1	55	79	16	129	40	0	7	50	1.37
19900--19943	23	1.9	23	90	0	70	70	0	0	29	0.88
22928--22977	2	25.5	2	95	4	93	50	0	0	50	1.00
23086--23123	16	2.3	17	86	13	53	42	0	2	55	1.14
23123--23178	30	1.9	29	85	7	78	44	1	1	51	1.22
23604--23642	11	3.5	11	86	10	53	51	0	0	48	1.00
24552--24576	12	2.1	12	100	0	50	72	0	0	28	0.86
24886--24935	26	1.9	26	88	8	75	26	10	10	54	1.65
34517--34552	2	18.0	2	100	0	72	50	0	0	50	1.00
34802--34913	36	3.3	35	69	16	92	44	0	1	52	1.17
34779--34950	66	2.6	64	83	9	197	43	0	1	54	1.14
34896--34941	15	3.0	15	74	25	51	41	0	0	58	0.98
34927--35013	28	3.1	28	79	14	81	32	0	5	62	1.19
34802--34950	66	2.2	68	86	4	205	44	0	1	53	1.13
35060--35133	22	3.2	22	75	24	73	29	1	2	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34868--35123	124	2.1	125	82	6	315	36	0	4	58	1.23
36225--36262	18	2.1	19	85	5	51	57	0	0	42	0.98
36206--36265	30	2.0	30	87	9	88	51	0	0	48	1.00
36326--36483	11	15.3	11	74	13	63	40	0	0	58	1.07
36334--36482	10	14.7	10	71	18	60	40	0	0	57	1.08
36440--36480	19	2.2	19	91	8	66	24	0	0	75	0.80
36691--36735	22	2.0	22	100	0	90	26	13	15	44	1.83
37564--37672	45	2.4	45	85	0	146	23	14	24	36	1.93
47845--47882	2	19.0	2	100	0	76	50	0	0	50	1.00
55513--55546	16	2.1	16	88	0	50	50	5	5	38	1.51
56981--57100	64	1.9	64	82	0	150	38	20	13	27	1.90
62008--62040	15	2.2	15	94	0	57	27	9	6	57	1.53
62494--62524	14	2.3	13	94	5	53	16	6	0	77	0.97
62863--62920	28	2.1	27	81	12	66	37	3	6	51	1.46
62836--63232	207	1.9	207	89	1	616	31	9	9	49	1.66
66195--66228	2	17.0	2	100	0	68	50	0	0	50	1.00
67521--67603	34	2.5	33	82	3	112	25	6	27	40	1.79
72012--72229	34	6.5	34	86	1	278	24	7	27	40	1.82
72012--72231	67	3.3	67	87	1	305	24	7	27	40	1.82
78269--78293	13	1.9	13	100	0	50	36	16	16	32	1.90
78249--78315	33	2.0	33	88	0	98	32	11	14	40	1.83
78356--78380	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78389--78517	52	2.5	52	93	0	222	34	18	17	28	1.94
84001--84025	12	2.1	12	100	0	50	36	8	0	56	1.29
83792--84266	241	2.0	241	100	0	950	40	10	9	38	1.73
84242--84273	12	2.7	12	100	0	64	34	6	0	59	1.23
84343--84386	2	22.0	2	100	0	88	50	0	0	50	1.00
85239--85278	20	2.0	21	90	5	64	52	5	0	42	1.23
85973--86014	8	5.5	8	83	8	52	54	0	0	45	0.99
90627--90705	36	2.2	36	90	0	122	22	39	11	26	1.88
90640--90722	36	2.3	36	100	0	166	21	42	13	22	1.88
90640--90755	36	3.2	36	90	0	133	21	43	12	23	1.86
90717--90805	45	2.0	45	97	0	169	20	48	8	22	1.77
90882--90910	15	1.9	15	100	0	58	6	51	0	41	1.28
91386--91419	15	2.3	15	89	0	50	35	0	0	64	0.94
93258--93328	33	2.2	33	82	5	81	76	2	1	19	0.99
93387--93427	7	5.9	7	100	0	82	85	0	0	14	0.60
93342--93465	7	16.7	7	72	14	52	68	3	3	25	1.19
93387--93473	14	6.0	14	78	12	77	73	1	2	22	1.01
93240--93427	7	23.2	8	71	15	63	70	4	1	22	1.15
93886--93919	14	2.4	14	90	0	50	35	2	0	61	1.11
93951--94026	26	2.9	26	75	13	75	27	1	6	64	1.26
94099--94149	18	2.9	17	77	8	57	33	0	1	64	1.05
97929--98002	29	2.6	29	77	14	73	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97938--97988	25	2.0	26	84	3	68	50	0	0	49	1.00
98401--98426	2	13.0	2	100	0	52	50	0	0	50	1.00
99330--99514	60	3.1	60	68	15	175	42	7	6	43	1.58
100083--100156	13	5.5	13	70	12	51	47	1	2	48	1.24
100077--100130	28	1.9	28	96	0	99	57	0	0	42	0.98
102264--102311	3	15.7	3	95	4	87	66	0	0	33	0.92
102820--102867	23	2.1	23	88	0	69	16	35	6	41	1.74
107324--107397	16	4.6	16	70	12	62	45	5	4	44	1.45
115026--115060	17	2.1	17	100	0	70	40	11	0	48	1.39
116307--116450	53	2.8	51	75	18	129	50	2	0	46	1.21
116648--116701	21	2.5	22	77	14	60	46	0	0	53	1.00
117528--117585	30	2.0	29	82	3	71	55	0	0	44	0.99
118815--118886	32	2.3	30	80	15	76	41	0	0	58	0.98
119588--119635	25	2.1	23	85	14	64	43	0	0	56	0.99
120473--120523	5	10.6	5	91	8	88	0	19	0	80	0.71
120891--120994	33	3.2	32	72	11	97	53	2	0	43	1.15
120938--120997	21	2.7	23	78	17	65	55	1	0	43	1.10
122315--122370	26	2.2	25	81	12	62	35	0	0	64	0.94
124972--125010	21	1.9	21	84	5	53	56	5	2	35	1.35
126685--126719	18	1.9	18	94	0	61	57	0	0	42	0.99
126674--126727	28	1.9	28	85	7	74	53	0	1	44	1.11
126734--126772	17	2.3	17	82	8	53	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126799--126871	26	2.9	25	76	9	69	63	0	0	36	0.95
126834--126868	14	2.3	16	90	9	56	62	0	0	37	0.95
126946--126991	21	2.2	21	84	0	56	47	0	0	52	1.00
127265--127308	21	2.0	23	86	8	65	18	9	0	72	1.10
128045--128089	24	1.9	24	90	4	74	60	0	0	40	0.97
128218--128261	15	3.1	14	83	9	54	59	0	2	38	1.10
128311--128338	5	5.6	5	100	0	56	17	0	0	82	0.68
128303--128339	15	2.4	16	86	13	60	18	5	0	75	0.99
128407--128444	18	2.1	18	85	9	51	84	0	10	5	0.77
128964--128988	13	1.9	13	100	0	50	0	12	0	88	0.53
132898--132950	2	26.5	2	100	0	106	50	0	49	0	1.00
155265--155289	2	12.5	2	100	0	50	52	0	0	48	1.00
155963--156002	14	2.9	14	92	0	62	22	27	27	22	1.99
156269--156306	12	3.2	12	85	7	51	28	0	2	68	1.03
156630--156670	1	41.0	1	90	0	64	2	95	0	2	0.33
157993--158021	3	9.7	3	100	0	58	34	0	31	34	1.58
158800--158831	2	16.0	2	100	0	64	50	0	0	50	1.00
159505--159557	22	2.4	22	81	6	63	37	0	1	60	1.08
161319--161376	28	2.1	28	96	0	107	39	24	8	27	1.84
164565--164589	4	6.2	4	100	0	50	24	0	0	76	0.80
165585--165657	18	4.2	17	68	21	53	30	1	2	65	1.15
165604--165632	6	4.8	6	100	0	58	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166356--166415	15	4.4	14	77	16	63	56	1	0	41	1.09
166349--166402	25	2.2	24	81	15	65	53	0	1	44	1.11
166356--166402	12	3.5	13	77	11	51	55	0	0	44	0.99
166877--166925	21	2.4	21	81	15	59	40	0	0	59	0.98
166904--166960	28	2.0	29	83	10	73	50	0	0	49	1.00
166914--166988	39	1.9	39	81	5	89	57	0	1	41	1.07
173174--173217	19	2.2	20	80	4	54	50	0	0	50	1.00
173245--173292	22	2.2	22	81	7	53	64	4	0	31	1.12
173326--173378	24	2.2	24	83	12	65	37	0	1	60	1.08
173361--173417	30	1.9	30	82	7	71	42	1	5	50	1.35

Tables:   1   2   3   4   5   6   7   8   9